Pack: Proteomics Bioinformatics Workshop 2011

Description:

Retrieve Protein or Genome features (annotations) using the Distributed Annotation System (DAS).

Description:

Retrieve Protein or Genome sequences using the Distributed Annotation System (DAS).

Description:

Find cross-references (based on 100% sequence identity) for protein accessions from more than 95 distinct databases. For instance input a list of IPI accessions and find cross-references for Swissprot and Ensembl. Mappings can be limited by source database, taxonomic ID and activity status.

Description:

Find Biological Models (Ids and Names) from Biomodels querying by Gene Ontology terms.

Description:

Find PRIDE experiments in Human with related information like Cell Type and Tissue location filtering results by Gene Ontology terms. This is an example of how to use the PRIDE Biomart service in Taverna. Many other options are possible by modifying the filters and attributes of this service.

Description:

Find Reactome pathways and reactions (names and accessions) in Human querying by a Gene Ontology term. This is an example of how to use the Reactome Biomart service in Taverna. Many other possibilities are possible by modifying the filters and attributes options of the service.

Description:

Calculates the Isoelectric Point for a protein sequence using a protein accession as input

Description:

Get molecular interaction data in psi-mitab25 from IntAct through its REST PSICQUIC service. As input you can use an Uniprot Acc like "P99999" or a MIQL query like "alias:KHDRBS1".