e-(bio)science tool group2011-11-22T12:34:43+00:00/groups/872009-09-09T16:14:33+00:00M. Scott Marshall joined the e-(bio)science tool group groupurn:uuid:3a90f028-ccac-41d5-a2c0-0f64a048d9adM. Scott Marshall2009-05-15T15:45:35+00:00Marco Roos shared Supporting material for Roos et al., BMC Bioinformatics, SWAT4LS supplement (2009)Supporting material for BMC Bioinformatics, supplement for Semantic Web Applications and Tools for Life Science (2009) Structuring and extracting knowledge for the support of hypothesis generation in molecular biology Marco Roos , M. Scott Marshall , Andrew P. Gibson , Martijn Schuemie , Edgar Meij , Sophia Katrenko , Willem Robert van Hage , Konstantinos Krommydas, Pieter W. Adriaans Acknowledgements We thank the myGrid team and OMII-UK for their support in applying their e-Science tools, and Machiel Jansen for his contribution to the early development of AIDA. This work was carried out in the context of the Virtual Laboratory for e-Science program (VL-e) and the BioRange program. These programs are supported by BSIK grants from the Dutch Ministry of Education, Culture and Science (OC&W). …urn:uuid:60fd76d6-1946-4e52-b90b-2cb60496595aMarco Roos2008-08-01T10:52:42+00:00Marco Roos shared e-science tool packPack of tools and software components that can be used to enhance your research. 'e-science' characteristics: interoperabie with other tools free to use by academics components can be shared and reused, potentially for other means stimulating sharing and reusing components urn:uuid:6c28246c-6d35-4b68-a128-7b8d9b16b019Marco Roos2008-06-03T13:06:24+00:00Katy Wolstencroft commented:Hi All, I've uploaded a zip file of the latest Taverna Workbench download. Taverna is an environment for designing and executing workflows. Taverna enables the connection and co-ordination of distributed tools and resources into complex in silico experiments. Best Wishes, Katyurn:uuid:a6f6763d-c82b-4c89-b26a-3437b05fb5aeKaty Wolstencroft2008-06-03T12:57:04+00:00Katy Wolstencroft joined the e-(bio)science tool group groupurn:uuid:b5dafa3f-c453-4e09-90f1-00ba10fc6353Katy Wolstencroft2008-06-03T10:19:45+00:00Morris Swertz commented:Ah, the workflow at www.myexperiment.org/workflows/126 should work though. urn:uuid:fd54a285-37ce-48ac-a1be-c3b25642f6dfMorris Swertz2008-06-03T10:13:26+00:00Morris Swertz commented:Hi all. I've added a file that defines a database for Mouse Phenome data. www.myexperiment.org/files/31 . This file can be run on the MOLGENIS generator to produce an empty database software mirror of the Mouse Phenome Database from www.jax.org/phenome . This MPD/MOLGENIS database can then be filled by dowloading the text dumps of MPD hosted at phenome.jax.org/pub-cgi/phenome/mpdcgi . This allows free querying of the data beyond what MPD now offers, in particular using Taverna. Find the result of such import on gbicserver1.biol.rug.nl:8080/molgenis4mpd/ (the GUI is very slow and takes about 30 secs to complete; that is because we only use the web service interface gbicserver1.biol.rug.nl:8080/molgenis4mpd/soap/api as part of a Taverna workflow that is available at www.myexperiment.org/workf …urn:uuid:b3874818-40a3-4051-b282-1ed7b1724da6Morris Swertz2008-06-03T10:07:16+00:00Morris Swertz joined the e-(bio)science tool group groupurn:uuid:2dbb97d3-8359-4f0d-a37b-980600683263Morris Swertz2008-06-03T09:46:58+00:00Marco Roos created the e-(bio)science tool group groupurn:uuid:beb85b2a-af4a-4f61-b77b-b8c6546485baMarco Roos