myExperiment - Groups - AID_myGrid

Overview

A group to share preliminary scientific material in support of scientific collaboration between AID in Amsterdam (plus close friends) and myGrid (plus close friends).

Created at: Tuesday 29 January 2008 13:52:50 (UTC)

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Marco Roos shared BioAID_EnirchBioModelWithProteinsFromText
This workflow is for demonstration purposes only. Please contact the authors if you wish to try it. We will gladly collaborate with you. Summary This workflow extracts proteins and protein relations from Medline. Extracted protein names (symbols of at least 3 characters) are validated against mouse, …

Wednesday 08 May 2013 14:51:52 (UTC)
M. Scott Marshall joined the AID_myGrid_collaboration group
Wednesday 09 September 2009 16:15:00 (UTC)
Marco Roos shared Supporting material for Roos et al., BMC Bioinformatics, SWAT4LS supplement (2009)
Supporting material for BMC Bioinformatics, supplement for Semantic Web Applications and Tools for Life Science (2009) Structuring and extracting knowledge for the support of hypothesis generation in molecular biology Marco Roos , M. Scott Marshall , Andrew P. Gibson , Martijn Schuemie , Edgar Meij , …

Friday 15 May 2009 15:45:34 (UTC)
Marco Roos shared AIDA demo pack
Pack with AIDA demo material

Sunday 14 December 2008 21:35:46 (UTC)
Don Cruickshank joined the AID_myGrid_collaboration group
Wednesday 10 September 2008 13:18:57 (UTC)
Marco Roos shared e-science tool pack
Pack of tools and software components that can be used to enhance your research. 'e-science' characteristics: interoperabie with other tools free to use by academics components can be shared and reused, potentially for other means stimulating sharing and reusing components

Friday 01 August 2008 10:52:42 (UTC)
Jun Zhao joined the AID_myGrid_collaboration group
Thursday 12 June 2008 17:00:42 (UTC)
Marco Roos shared From biologist to web service to Taverna to myExperiment to biologist
A movie to show the principle of the round trip from a biology question via pieces of code wrapped as web services and combined into a workflow (computational experiment) in Taverna, via uploading to myExperiment and back to the biologist through myExperiment's run facility. NB: at the time of upload …

Friday 21 March 2008 19:00:27 (UTC)
Carole Goble joined the AID_myGrid_collaboration group
Thursday 20 March 2008 16:26:10 (UTC)
Marco Roos shared BioAID_ProteinDiscovery_filterOnHumanUniprot_perDoc_html
This workflow finds proteins relevant to the query string via the following steps: A user query: a single gene/protein name. E.g.: (EZH2 OR "Enhancer of Zeste"). Retrieve documents: finds 'maximumNumberOfHits' relevant documents (abstract+title) based on query (the AIDA service inside is based on Apa …

Friday 29 February 2008 01:34:48 (UTC)
Stuart Owen, Paolo, and Katy Wolstencroft joined the AID_myGrid_collaboration group
Marco Roos created the AID_myGrid_collaboration group
Tuesday 29 January 2008 13:52:50 (UTC)

Information Owner

Marco Roos

8 members

7 shared items

This group has been credited 1 time

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Members (8)

Owner

Marco Roos

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Workflow

Taverna 1

Uploader

Marco Roos

BioAID_ProteinDiscovery_filterOnHumanUnipr... (11)

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This workflow finds proteins relevant to the query string via the following steps: A user query: a single gene/protein name. E.g.: (EZH2 OR "Enhancer of Zeste"). Retrieve documents: finds 'maximumNumberOfHits' relevant documents (abstract+title) based on query (the AIDA service inside is based on Apache's Lucene) Discover proteins: extract proteins discovered in the set of relevant abstracts with a 'named entity recognizer' trained on genomic terms using a Bayesian approach; the AIDA serv...

Created: 2009-05-28

Credits: Marco Roos Martijn Schuemie AID AID_myGrid_collaboration

Attributions: BioAID_DiseaseDiscovery_RatHumanMouseUniprotFilter

Group: AID_myGrid_collaboration

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