Group: Text mining network

News

1. 

   Kristina Hettne shared Prioritize gene list for the Cure game

   

   This workflow prioritizes a gene list according to its association with the 'concept_id'. Here we are prioritizing a gene list against breast cancer, in order to try to beat Barney in the game The Cure ( http://genegames.org/cure/ ). Note: Before running this workflow the gene names supplied in the g …

   Wednesday 29 April 2015 09:23:12 (UTC)
2. 

   Kristina Hettne shared Concept profile analysis using Anni Web services

   Concept profile analysis is a knowledge discovery method that proved successful in generating hypotheses about molecular mechanisms explaining the results from genotype-phenotype studies. This technology has been implemented in the Anni standalone application ( http://biosemantics.org/anni ). This pa …

   Wednesday 28 August 2013 12:02:59 (UTC)
3. 

   Mdmmsrhs, Mustafa, and Kristina Hettne joined the Text mining network group
4. 

   Paul Fisher shared Text Mining Workflows

   This pack contains workflows to navigate from candidate Quantitative Trait genes and pathways to a given phenotype.

   Wednesday 08 December 2010 11:55:13 (UTC)
5. 

   Paul Fisher shared Extract Scientific Terms

   

   This workflow takes in a document containg text and removes and non-ascii characters. The cleaned text is then sent to a service in dresden to extract all scientific terms. These terms represent a profile for the input document. Any null values are also removed.

   Wednesday 08 December 2010 11:50:05 (UTC)
6. 

   Paul Fisher shared Pathway to Pubmed

   

   This workflow takes in a list of KEGG pathway descriptions and searches the PubMed database for corresponding articles. Any matches to the pathways are then retrieved (abstracts only). These abstracts are then returned to the user.

   Wednesday 08 December 2010 11:47:14 (UTC)
7. 

   Paul Fisher shared Gene to Pubmed

   

   This workflow takes in a list of gene names and searches the PubMed database for corresponding articles. Any matches to the genes are then retrieved (abstracts only). These abstracts are then returned to the user.

   Wednesday 08 December 2010 11:42:39 (UTC)
8. 

   Paul Fisher shared Rank Phenotype Terms

   

   This workflow counts the number of articles in the pubmed database in which each term occurs, and identifies the total number of articles in the entire PubMed database. It also identified the total number of articles within pubmed so that a term enrichment score may be calculated. The workflow also t …

   Wednesday 08 December 2010 11:38:40 (UTC)
9. 

   Paul Fisher shared Cosine vector space

   

   This workflow calculates the cosine vector space between two sets of corpora. The workflow then removes any null values from the output. this is some extra text vbeing added

   Wednesday 08 December 2010 11:35:21 (UTC)
10. 

    Siaw Ling, Joerg, and Motaz K. Saad joined the Text mining network group
11. 

    Paul Fisher shared Ondex and Taverna Tutorial

    Biological Data Integration Using Ondex and Taverna: A Tutorial 25/26th November 2009 The University of Manchester The Ondex SABR project ( http://ondex.org/sabr.html ) invite you to a two-day tutorial that aims to show participants how to use Ondex and Taverna to perform common biological data colle …

    Thursday 22 October 2009 13:50:59 (UTC)
12. 

    Dmitry Katsubo, and Brian Rea joined the Text mining network group