myExperiment - Groups - VLIZ Workshop Oct 2014

Overview

October 6th

1300 -> 1400 Arrival and lunch

1400 -> 1430 Introductions, round table, learning objectives

1430 -> 1530 Presentation: Introduction to Workflows with Taverna, myExperiment and BiodiversityCatalogue

Register with myExperiment, join the group and download the ppts used for the rest of the day (below)
Introduction to myGrid

1530 -> 1600 Coffee

1600 -> 1615 Setup check - Taverna and R should be preinstalled (instructions sent the week before); sorting out those who can't get it to work.

Checking Taverna installation

1615 -> 1730 Tutorial: Building a simple workflow. Using Taverna Workbench and exploring BiodiversityCatalogue

October 7th

0830 -> 0900 Coffee

0900 -> 0915 Recap on Taverna workbench, building simple workflows (interface etc.) [Demo by Aleksandra - if needed the ppt from the previous day will be used]

0915 -> 1030 Exploring BiodiversityCatalogue and extending the simple workflow

Nested workflows

1030 -> 1100 Coffee

1100 -> 1200 Tutorial: Extending the simple workflow. Inputting data directly, via local files, via URL's. Managing spreadsheet data. Importing and exporting data to / from workflows via spreadsheets

1200 -> 1300 Tutorial: Advanced Taverna features [lists, looping, parallel execution]

Advanced Taverna

1300 -> 1400 Lunch

1400 -> 1445 Presentation: Demonstration of biodiversity workflows in the BioVeL portal

Working with BioVeL Portal

1445 -> 1530 Tutorial: Using R in Taverna Workbench

Using R in Taverna

1530 -> 1600 Coffee

1600 -> 1630 Using R in Taverna Workbench Continued

1630 -> 1730 Tutorial: VLIZ services in BiodiversityCatalogue and use in Taverna

WoRMS and OBIS services

October 8th

0900 -> 0930 Recap

0930 -> 1030 Tutorial: Components in Taverna

Components

1030 -> 1100 Coffee Break

1100 -> 1200 Tutorial: Tool service

Tool service

1200 -> 1230 Presentation:

Embedding workflows in your website

1230 -> 1315 Discussion and wrap up

help

1315 -> 1400 Lunch

Created at: Wednesday 01 October 2014 10:42:59 (UTC)

Unique name: VLIZOct2014

News

Christian shared Bonn 2014 Shims Slides

Tuesday 07 October 2014 07:24:31 (UTC)
Nabil Youdjou, Francisco Hernandez, Joram Declerck, Ward Appeltans, Bart V., lennert tyberghein, Klaas, Bart Aelterman, Aaike De Wever, Anton van de putte, Samuel Bosch, and Aleksandra Pawlik joined the VLIZ Workshop Oct 2014 group
Alan Williams shared XPath service
A PDF file containing a presentation on how to use the XPath service in Taverna

Friday 03 October 2014 15:36:07 (UTC)
Alan Williams shared WoRMS and OBIS services
A PDF file containing a presentation on how to use WoRMS and OBIS services in Taverna

Friday 03 October 2014 15:35:11 (UTC)
Alan Williams shared Working with BioVeL Portal
A PDF file containing a presentation on how to work with the BioVeL portal

Friday 03 October 2014 15:34:08 (UTC)
Alan Williams shared Using R in Taverna
A PDF file containing a presentation on how to use R in Taverna

Friday 03 October 2014 15:33:06 (UTC)
Alan Williams shared Tool service
A PDF file containing a description of how to use the tool service in Taverna

Friday 03 October 2014 15:32:14 (UTC)
Alan Williams shared Using BiodiversityCatalogue
A PDF file containing a presentation on how to use BiodiversityCatalogue

Friday 03 October 2014 15:31:22 (UTC)
Alan Williams shared Taverna introduction
A PDF file containing a presentation introducing Taverna

Friday 03 October 2014 15:29:44 (UTC)
Alan Williams shared Simple workflow
A PDF file containing a presentation about creating a simple workflow in Taverna

Friday 03 October 2014 15:28:51 (UTC)
Alan Williams shared Nested workflows
A PDF file containing a presentation about nested workflows within Taverna

Friday 03 October 2014 15:27:58 (UTC)
Alan Williams shared Introduction to myGrid
A PDF file containing a presentation introducing myGrid

Friday 03 October 2014 15:27:06 (UTC)