myExperiment

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booiiing

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EPR-Solver

Created: 2009-06-05 16:46:06 | Last updated: 2009-06-05 18:10:35

Credits: booiiing

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This little perl-script automatically probes all assignments (g1, g2, g3) to (gx, gy, gz) (including negated values) in EPR/ESR (electron paramagnetic resonance / electron spin resonance) and tests them for several conditions. In the end, it gives you the assignements, as well as Eg, E1, E2, V/Delta and a, b, c. It is published under the terms of the GNU General Public Licence. Thus uploading is allowed for everyone to make it easier to contribute.

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David De Roure

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The impact of workflow tools on data-centric research

Created: 2009-05-05 23:59:48

Credits: David De Roure Carole Goble

Attributions: Pathways and Gene annotations for QTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

final draft article for Tony Hey and Kristin Tolle's book "Data Intensive Computing: The Fourth Paradigm of Scientific Discovery"

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David De Roure

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Word file for myExperiment CCPE paper

Created: 2009-04-10 13:40:18 | Last updated: 2009-04-21 15:01:57

Credits: CCPE eScience 2008 special issue myExperiment paper co-authors

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Note this is not in any aprticular CCPE template as they only provide a LaTeX template

File type: Word document

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Paul Dobson

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ONDEX Graph from the Yeast Jamboree SBML

Created: 2009-02-10 10:51:58 | Last updated: 2009-02-10 12:48:52

Credits: Paul Dobson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The oxl file represents in ONDEX the SBML reconstruction of yeast metabolism produced in the "Jamboree", as described in the following paper. PMID 18846089 A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nature Biotechnology. 2008 Oct;26(10):1155-60. Herrgård MJ, Swainston N, Dobson P, Dunn WB, Arga KY, Arvas M, Blüthgen N, Borger S, Costenoble R, Heinemann M, Hucka M, Le Novère N, Li P, Lieb...

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Dfmac

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London Roadshow PPT

Created: 2009-01-29 13:56:35

Credits: Dfmac

License: Creative Commons Attribution-Share Alike 3.0 Unported License

David Fergusson's presentation for London Roadshow

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Will

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Seeding cells protocol for OMERO.editor

Created: 2008-09-15 14:46:28 | Last updated: 2008-10-07 13:09:38

Credits: Will

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A simple demo protocol for OMERO.editor. You can download OMERO.editor (as part of OMERO clients) from here.

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Don Cruickshank

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White noise

Created: 2007-11-22 15:31:12 | Last updated: 2009-07-08 16:57:59

License: GNU General Public License (GPL) 2.0

Perfect for headphones in a busy environment.

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Alexey Mints

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Tools to split spatial N-dimensional data in cells o...

Created: 2016-10-19 09:31:56 | Last updated: 2018-06-29 09:12:04

Credits: Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Documentation to follow later

File type: text/x-python

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Alexey Mints

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Multiplot

Created: 2014-10-05 11:04:30 | Last updated: 2018-03-12 15:20:56

Credits: Alexey Mints

License: Creative Commons Attribution-Share Alike 3.0 Unported License

usage: multiplot.py [-h] [-x XCOLUMN] [-y COLUMNS] [-f FILES] [-o OUTPUT] [-s STYLE] [-xl XLABEL] [-yl YLABEL] [--log LOG] [-ltitles LEGENDTITLES] [-m MARKER] [-d DELIMITER] [--skip-header SKIP_HEADER] [-lp LEGEND_POSITION]Background calculatoroptional arguments: -h, --help &n...

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Maria Paula Balcazar-Vargas

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Demographic data Cryptantha flava

Created: 2013-08-13 10:13:10 | Last updated: 2014-07-04 12:30:08

Credits: Robcito

Attributions: Integral Projection Model for Demographic Modelling v34

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .csv file of one year demographic data of the species: Cryptantha flava, collected and published by Roberto Salguero-Gómez (University of Queensland).This file allow users to run Integral Projection Model workflow. http://www.myexperiment.org/workflows/3687.html Each row represents one observation of an organism in the population at one census time t with the following column names:size: size of individuals in census time tsizeNext: size of individual...

File type: Excel workbook

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Drkrish...

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Industrial process for OXICONAZOLE Dr Krishnasarma P...

Created: 2012-07-24 11:38:44 | Last updated: 2013-06-21 09:49:15

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Industrial process for OXICONAZOLE Dr Krishnasarma PathyOxiconazole inhibits ergosterol biosynthesis, which is required forcytoplasmic membrane integrity of fungi. It acts to destabilize the fungal cyctochromeP450 51 enzyme (also known as Lanosterol 14-alpha demethylase). This is vital in thecell membrance structure of the fungus. Its inhibition leads to cell lysis. Oxiconazole hasalso been shown in inhibit DNA synthesis and suppress intracellular concentrations ofATP. Like other imidazole an...

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5-cyanophthalide; high purity; terephthalic acid & diphthalide derivatives; alkyl carbomate

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M. Kirsh

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The Path of Knowledge ; The Knowledge of Path - New ...

Created: 2010-03-31 05:35:36

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract An unwitnessible silence is suggested to accompany all change. Conceptual paradox involving mind and matter, contrasting mind as an enduring state of the becoming of energy into a state of matter, and matter as the constantly becoming environment, is tested against criteria of witnessibility with respect to criteria for the existence of entities and phenomenon for consistency to capture an acceptably reasoned description, from a modern perspective, of cultural evolution....

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Paolo

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EDBT Provenance talk presentation - PFD version

Created: 2010-03-26 14:01:00 | Last updated: 2010-03-26 14:02:09

Credits: Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

PDF version -- see related pack for Native Keynote link to paper link to conference proceedings

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provenance talk

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Architpuri

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test

Created: 2010-03-08 14:43:10

Credits: Architpuri

License: Creative Commons Attribution-Share Alike 3.0 Unported License

test

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M. Kirsh

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THE PATH OF KNOWLEDGE : KNOWLEDGE OF THE PATH

Created: 2010-02-22 00:21:43

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract The philosophies of Parmenides, Socrates, Aristotle, the science of Einstein is discussed with respect to a division of the empirical and abstracted as they refer to the universe and universals. Methodologies of the natural and anthropological sciences are contrasted in order to discuss validity in the representation of nature. A physical model for the evolution of knowledge is presented that distinguishes both the conceptual and physical in terms of...

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asceticism
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biological development
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cross cultural exchange
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ethnography and science
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graph of an egg
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representation of nature
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resources of volume and space in the natural

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M. Kirsh

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Introduction to My Presented Works-Marvin E. Kirsh

Created: 2010-02-15 01:10:45 | Last updated: 2010-02-15 04:40:32

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

An introductory background and stated approach with initial assumptions employed towards the creation of my manuscripts and ideas. My notions reflect a naturalism, with a slant oriented from the realism of perception, away from abstracted theory that is given its' only validity from empirical test rather than direct first person witness. I began this project as a graduate student in the biological sciences with a statement from a professor of classical g...

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M. Kirsh

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Physical Contiguity of "The Concept" : The Concept o...

Created: 2010-02-05 03:37:55 | Last updated: 2010-02-05 19:31:11

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract It is an entity of nature, the human conceiver that emerges ?the concept?. It might be conjectured that in order for a human conceiver to conceive a concept of ?the concept?, as a subset of nature, first he must have a concept of nature with which to commence investigation into the nature of ?the concept?. Second, the nature of ?the concept? might be expected to be an emergence from the individuals? concept of nature; in essence to reflect a conce...

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: physical contiguism
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cognition
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consciousness
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coordinate system for space
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cultural and biological evolution
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emergence and scientific method
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genetically inherited behavior
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hard problem
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inherited proximity
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language and nature
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logic of nature.universal consciousness.cognitive representation.natural processes.uniqueness in nature.mobius strip.one sided surface genes and evolution
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mind and matter
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mirror
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mirror symmetry
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ontology in social and natural science
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origin of life
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path cause and effect
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perception and the external
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plot of an egg
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relativity space volume and culture
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slice of nature
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symbolism in science
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the concept
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unified theory of nature
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universal consciousness
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universal form
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universal shape
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universals and constants

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M. Kirsh

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Uniqueness, Self Belonging and Intercourse in Nature...

Created: 2010-01-09 04:42:06

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract Biological organization is discussed within a holistic framework . A new orientation is presented of natural processes with an approach in model construction that is focused strictly on physical form and centered away from abstractions that escape the perceptual senses, lead towards the postulation of non-verifiable and non-witnessible entities. A universal construction composed of first perspective representations of path, witness as unique loci in volumes o...

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affinity
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correspondences in nature
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descriptiontimeforceuniversaluracilvelocity
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einstein
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energy
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entity
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evolution
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force
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intercourse
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inversion
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mass
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mobius strip
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numbers and kinds
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origin of life
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phenotype
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representation of nature
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RNA
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role of dna
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self avoidance
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self belonging
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set theory
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social science
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theory of nature
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theory of relativity
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time
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unified theory of nature
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uniqueness
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universal form
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universal shape
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volume and space

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M. Kirsh

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What Happened? Are We Asking or Telling?

Created: 2010-01-02 04:12:38

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract A conceptual parallel is created between studies in anthropology and natural science. A space occupied by “the conceptualization” is argued to not only parallel symbolically the scientifically conceived value of volume as space, but to have an equal meaning- the spaces of the conceptual ordering of nature as manifestations of energy are held to be paralleling manifestations of the same energies that mold the environm...

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David R Newman

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NeuroHub Presentation to Southampton Neuroscientists

Created: 2009-11-26 11:59:43

Credits: David R Newman

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This presentation was given on 19th November 2009 to allow the the neuroscientists in Southampton to get an overview of what we NeuroHub intended to do and get feedback to find out what they would and wouldn't find useful.

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