File Entry: Very simple script to fix pathway commons biopax files
Created: 2009-11-04 11:05:46
|
License
|
Credits (1)
|
Attributions (0)
|
Tags
|
Featured in Packs (0)
|
Attributed By (0)
|
Favourited By (0)
|
| Version History | Comments (0) |
| Version History | Comments (0) |
| Title | Very simple script to fix pathway commons biopax files |
| File name | fixBioPAX.pl |
| File size | 347 |
| SHA1 | 6ede557ea3629d458c631c778174b19e72e94a26 |
| Content type | application/x-perl |
Description
This very simple script (it only replace one type of ID!) will fix BioPAX files coming from PathwayCommons.
In this files, rdf:ID is used instead of rdf:about, and since these files contains repetition, this results in an error in strict parsers.
This error gets undetected in many system as they disable replicated ID checking for performance, but it's still a problem in some.
Download
Download File
Version History
No comments yet
Log in to make a comment