Import_and_covertgenes00
Accepts a CSV file with gene identifiers in one of the columns
2012-01-15 10:21:21.27 UTC
Gene_ListpathDescRPathway_ImgGeneDescrPathway_IDKEGG_mouseSpreadsheetImportfileurl0D11net.sf.taverna.t2.activitiesspreadsheet-import-activity1.4net.sf.taverna.t2.activities.spreadsheet.SpreadsheetImportActivity
2
3
8
425
false
false
true
EMPTY_STRING
PORT_PER_COLUMN
,
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemmusculus_gene_ensemblmmusculus_gene_ensembl.refseq_mrna_filter1mmusculus_gene_ensembl00net.sf.taverna.t2.activitiesbiomart-activity1.4net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_gene_liststringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUnigeneID_to_KEGG_Pagenes0pathDescRest11PathwayImage11gene_description11pathwayID22kegg_mouseID11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSpreadsheetImportfileurlmmusculus_gene_ensemblmmusculus_gene_ensembl.refseq_mrna_filterMerge_gene_liststringlistUnigeneID_to_KEGG_PagenesGene_ListpathDescRPathway_ImgGeneDescrPathway_IDKEGG_mouse
9ec4e123-35e2-44a4-85ad-8bbb6ed253ac
2012-01-12 11:42:55.593 UTC
22134fca-cdaa-4881-b1f0-e4a9ca769346
2012-01-12 11:44:31.513 UTC
ae3b5da9-50a0-47cd-a527-16e18c4a5fea
2013-08-29 14:06:04.594 UTC
f637cbbc-8904-43e5-a15a-4bb59053bdde
2012-01-12 10:18:56.117 UTC
ad63e315-95f6-4935-9369-ba17345b54a5
2012-01-12 10:25:25.569 UTC
75f05657-4ff7-4d60-9b5e-acd02b371b27
2012-01-12 11:02:59.668 UTC
23ac6761-b437-4cf5-b9b7-b8db386a8269
2012-01-12 11:46:26.462 UTC
9037c2cb-7058-4396-9ae5-f197f3a3c28f
2012-01-12 11:49:52.613 UTC
986cc145-581d-459b-8f6b-a39e8da02e26
2012-01-12 10:24:46.302 UTC
Katy Wolstencroft
2012-01-13 08:30:49.698 UTC
c5573c3d-e8dd-46bc-aced-b5a34934a528
2012-01-13 08:30:35.632 UTC
def34b9e-45cc-4af8-8822-3af7965b4c8d
2012-01-12 11:53:53.344 UTC
Import and covert
2012-01-13 08:30:59.447 UTC
fc15366f-6ee1-401e-b281-6f11dfb3d1de
2012-01-12 11:31:15.31 UTC
89fdb276-ecc1-4b5f-95d6-68cc9584020c
2012-01-13 08:41:46.710 UTC
f240602f-6534-4cc6-9e1d-eef93eb44720
2012-01-12 11:59:50.150 UTC
71b5703e-1861-4a85-b122-882a96435431
2012-01-12 10:29:32.209 UTC
df1ba132-42d2-48d2-8d9f-63029693cce9
2012-01-12 10:20:01.83 UTC
e1edb16b-e9af-4d96-8cf6-9521a92a822c
2012-01-15 10:21:50.457 UTC
f6b50bb8-9067-4303-b72b-9e727d0717af
2012-01-13 09:18:20.813 UTC
fdb06546-7312-4916-aeef-7dfd7edec3bc
2012-01-12 11:48:29.747 UTC
b40071df-fd8d-41fb-b617-b81ee58cf884
2012-01-12 11:29:40.119 UTC
This workflow extracts a column of RefSeq gene IDs from a CSV file and then converts them to Unigene identifiers
2012-01-13 08:41:46.551 UTC
UnigeneID_to_KEGG_Pagenes00
Accepts a list of Unigene Gene Identifiers
2012-01-13 09:20:04.930 UTC
Mm.365444
2012-01-16 10:50:24.249 UTC
geneListkegg_mouseIDgene_descriptionpathDescRestpathwayIDPathwayImageadd_unigene_to_stringinput0output00net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity
input
0
'text/plain'
java.lang.String
true
output
0
0
workflow
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemerge_pathwaysstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_duplicate_pathwaysstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
strippedlist
1
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
UserNameHere
2013-08-29 11:59:01.985 UTC
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokesplit_by_regexregex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
split
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
0
0
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_gene_listregex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
split
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokebconvRESTsource0target0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://rest.kegg.jp/conv/{target}/{source}
application/xml
application/xml
String
false
false
false
false
true
source
java.lang.String
target
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketarget_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
mmu
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeExtractGeneNamestringlist1group0regex0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
java.lang.String
true
filteredlist
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokegroup_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_value_2value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
mmu:[0-9]{4,}
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebtit_RESTgeneID0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://rest.kegg.jp/find/genes/{geneID}
application/xml
application/xml
String
false
false
false
false
true
geneID
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetPathwaybyGenegeneID0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://rest.kegg.jp/link/pathway/{geneID}
application/xml
application/xml
String
false
false
false
false
true
geneID
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeExtractPathwayNamegroup0regex0stringlist1filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
java.lang.String
true
filteredlist
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokegroup_value_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_value_3value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
path:[0-9a-z]{5,}
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokepathwayEntrypathID0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://rest.kegg.jp/get/{pathID}
application/xml
application/xml
String
false
false
false
false
true
pathID
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokepathwayImagepathID0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity
GET
http://rest.kegg.jp/get/{pathID}/image
application/xml
application/xml
String
false
false
false
false
true
pathID
java.lang.String
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeadd_unigene_to_stringinputmerge_pathwaysstringlistRemove_duplicate_pathwaysstringlistsplit_by_regexregexsplit_by_regexstringSplit_gene_listregexSplit_gene_liststringbconvRESTsourcebconvRESTtargetExtractGeneNamestringlistExtractGeneNamegroupExtractGeneNameregexbtit_RESTgeneIDgetPathwaybyGenegeneIDExtractPathwayNamegroupExtractPathwayNameregexExtractPathwayNamestringlistpathwayEntrypathIDpathwayImagepathIDgeneListkegg_mouseIDgene_descriptionpathDescRestpathwayIDPathwayImage
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2012-01-13 09:05:33.527 UTC
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2012-01-16 10:23:59.332 UTC
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2012-01-16 09:37:52.209 UTC
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2012-01-12 12:33:32.728 UTC
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2012-01-12 10:18:56.117 UTC
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2012-12-17 11:58:47.791 UTC
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2012-12-17 12:02:09.583 UTC
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2012-01-13 08:52:55.375 UTC
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2012-12-17 12:32:25.905 UTC
1061db1e-c04d-478a-b4a1-b67329c51d4b
2012-12-17 10:49:38.527 UTC
This workflow accepts a list of Unigene gene identifiers and returns descriptions of gene functions and a list of all pathways each gene is involved in (plus pathway image) from the KEGG database.
This workflow replaces the earlier SOAP version with the new KEGG REST services
2012-12-17 12:40:03.47 UTC
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2012-01-12 10:20:01.83 UTC
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2012-01-16 09:48:46.584 UTC
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2012-01-12 10:24:46.302 UTC
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2012-12-17 12:35:42.548 UTC
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2012-01-16 09:46:45.734 UTC
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2012-01-12 16:39:56.919 UTC
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2012-01-12 12:31:19.37 UTC
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2013-08-29 11:59:13.827 UTC
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2012-01-12 12:29:04.219 UTC
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2012-01-12 10:25:25.569 UTC
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2012-12-17 12:40:21.194 UTC
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2012-01-12 17:02:49.879 UTC
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2012-12-17 11:03:03.173 UTC
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2012-12-17 11:15:09.709 UTC
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2012-12-17 12:37:17.809 UTC
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2012-01-16 11:12:30.677 UTC
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2012-12-17 12:11:42.387 UTC
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2012-12-17 12:31:59.155 UTC
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2012-01-12 17:11:12.239 UTC
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2012-01-12 12:53:56.861 UTC
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2012-01-12 13:04:45.858 UTC
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2013-08-29 12:02:24.897 UTC
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2012-01-12 11:02:59.668 UTC
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2012-12-17 11:10:31.792 UTC
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2012-01-12 13:01:38.59 UTC
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2012-01-16 09:48:24.341 UTC
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2012-01-15 11:07:25.473 UTC
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2012-12-17 10:55:33.891 UTC
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2012-12-17 12:37:56.212 UTC
a3f934ef-ea26-4987-b11f-f6b49d9d7cc1
2012-01-12 16:54:43.67 UTC
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2012-12-17 10:46:20.94 UTC
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2012-01-12 13:02:19.887 UTC
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2012-12-17 11:04:49.549 UTC
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2012-01-13 09:21:08.925 UTC
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2012-01-13 08:47:04.820 UTC
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2012-01-16 10:20:10.308 UTC
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2012-12-17 12:28:52.344 UTC
ebd27909-f5b9-4e20-a93d-62bfdef808f1
2012-01-16 10:50:50.395 UTC
UnigeneID to KEGG Pathways
2012-12-17 12:39:12.864 UTC
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2012-01-12 12:30:24.941 UTC
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2012-01-12 12:37:04.62 UTC
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2012-01-12 13:09:55.61 UTC
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2012-01-12 10:29:32.209 UTC
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2012-01-12 13:03:13.355 UTC
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2012-12-17 12:34:16.57 UTC
968a594a-d272-4e2f-b9ea-6cb3111356c5
2012-12-17 10:53:08.580 UTC
Paul Fisher and Katy Wolstencroft
2012-01-13 08:45:13.591 UTC
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2012-12-17 10:54:15.450 UTC
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2012-12-17 12:09:46.936 UTC
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2012-01-16 10:44:37.182 UTC
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2012-12-17 12:30:22.646 UTC
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2012-01-16 09:27:52.62 UTC
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2012-01-12 12:59:09.299 UTC
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2012-12-17 11:54:41.384 UTC
1f7df96e-3a3b-49ea-9f39-2dc52e3c5dd8
2012-12-17 12:18:42.940 UTC