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Workflow Generate inChi information (1)

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Uses the GenerateInchiInfo web service operation from ChemSpider to generate information relating to the InChi string for a given chemical compound

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Workflow Generate inChi (1)

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Generates an inChi string for a given chemical represented by its SMILES string, SDF or MOL file using the inchi web service provided by ChemSpider

Created: 2010-07-09 | Last updated: 2010-07-09

Credits: User Peter Li

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Blob A U-Compare workflow to extract biological events fr...

Created: 2010-07-08 21:50:25 | Last updated: 2010-09-02 04:46:05

Credits: User Yoshinobu Kano

License: GNU Lesser General Public License (LGPL) 2.1

This is a U-Compare workflow to extract biological events from texts, provided to be used with our example Taverna workflow. See our publication Kano, et al., 2010,  "Text Mining Meets Workflow: Linking U-Compare with Taverna " http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btq464 for details. This file is formatted as a UIMA CPE workflow XML descriptor file.

File type: XML

Comments: 0 | Viewed: 120 times | Downloaded: 54 times

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Workflow EBI_InterProScan for Taverna 2 (1)

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the s...

Created: 2010-07-08 | Last updated: 2010-07-08

Credits: User Benb

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Workflow EBI_InterProScan for Taverna 2 (1)

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Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the s...

Created: 2010-07-08 | Last updated: 2010-07-08

Credits: User Benb

Workflow Who is Dr Labrie according to Pubmed publi... (2)

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To use this wokflow you need to import services from To use this wokflow you need to import services from http://proxy.bio2rdf.org/bio2rdf/services.txt you can explore the loaded data at http://proxy.bio2rdf.org/fct

Created: 2010-07-08 | Last updated: 2010-07-08

Credits: User Francois Belleau

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Workflow AlitoraKDAInputModule test workflow (1)

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 This workflow calls the AlitoraKDAInputModule service from the test GenePattern server.

Created: 2010-07-07 | Last updated: 2010-07-07

Credits: User Peter Li

Workflow Pivoting with Consideration of Example Wei... (1)

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This process shows how the Pivoting operator can also consider example weights encoded by a special attribute with the role 'weight'. The first operators only create a demo data set for this purpose, the actual pivoting is performed by the last operator only. I recommend to place a breakpoint before the Pivoting and check the data (structure) in order to see how the Pivoting handles the weights.

Created: 2010-07-07

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Blob NCBI Entrez Utilities Web service set description file

Created: 2010-07-06 14:40:27 | Last updated: 2010-07-06 14:42:59

Credits: User Alex Nenadic

License: Creative Commons Attribution-Share Alike 3.0 Unported License

An XML file containing the NCBI Entrez Utilities Web services descriptions that can be loaded in Taverna in order to add this service set to the Taverna Workbench's "Available Services".

File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 83 times

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Pack NCBI Entrez Utilities Web service set


Created: 2010-07-06 14:17:35 | Last updated: 2010-07-22 13:17:33

NCBI Entrez Utilities Web service set provides access to EGQuery, ESummary, EInfo, ELink, ESearch, ESpell, EPost and EFetch utilities. Services' descriptions can be found at the NCBI's Web site at: http://www.ncbi.nlm.nih.gov/entrez/query/static/esoap_help.html You can add this set of services to the list of available services in the Service Panel in the Taverna Workbench by right clicking on "Available Services" and selecting "Import services". The service set can eith...

2 items in this pack

Comments: 0 | Viewed: 126 times | Downloaded: 78 times

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