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adfsadf

Created: 2013-01-30 14:15:24

Credits: Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

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The Hypothesis for the wf4ever Demo Pack 2013

Created: 2013-01-30 14:06:43 | Last updated: 2013-01-30 14:07:25

Credits: Marco Roos

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

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Mining the Kegg pathway database with the ... (1)

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Genome-Wide Association studies (GWAS) with metabolomic phenotypes yield several statistically significant SNP-metabolite associations. To understand the biological basis of the association, scientists typically dwell on identifying genes in the vicinity of the SNP and the possible pathways that the gene participates in. The information needed to arrive at an understanding of the mechanistic basis of the association requires integration of disparate data sources. The purpose of this workflow ...

Created: 2013-01-30

Credits: Marco Roos

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Demo pack for wf4ever

Created: 2013-01-30 13:53:40 | Last updated: 2013-01-30 14:08:08

6 items in this pack

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Bio2RDF Talend workflow to populate PARP s... (1)

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Talend worflow to populate a semantic mashup about PARP family proteins. The mashup uploaded in Virtuoso triplestore is available at http://parp.bio2rdf.org.

Created: 2013-01-30 | Last updated: 2013-01-31

Credits: Francois Belleau

ROC_AUC_Workflow (1)

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This small workflow extracts the area under the curve (AUC) from the receiver operating characteristic (ROC) curve for all charge states analyzed by PeptideProphet. This measure can be used to compare the sensitivity and specificity of different search engines for matching tandem mass spectra to peptides.

Created: 2013-01-28

Credits: Magnus Palmblad

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Scientific Workflow Motifs - FGCS Special Issue Subm...

Created: 2013-01-28 10:16:31 | Last updated: 2013-01-28 10:19:29

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InterproScan_Example (3)

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text, xml or png. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished.

Created: 2013-01-28 | Last updated: 2013-01-30

Credits: Katy Wolstencroft

Blast_and_Interproscan (5)

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This workflow performs an NCBI blast at the EBI. It accepts a protein sequence as input. Default values have been set for the search database (Uniprot), the number of hits to return (10), and all scoring and matrix options. These can be changed in the workflow by altering the string constant values if required. The sequences for the top 10 hits are retrieved from the UniProt database and analysed using InterproScan (also from the EBI) to determine functional domains and motifs in each sequenc...

Created: 2013-01-28 | Last updated: 2013-01-30

Credits: Katy Wolstencroft

clustal_phylogeny (3)

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This workflow accepts a ClustalW protein sequence alignment and produces a phylogenetic tree, using the EBI clustalw_phylogeny web service, which implements phylip.

Created: 2013-01-28 | Last updated: 2013-03-11

Credits: Katy Wolstencroft