myExperiment - Content

Creator

Maria Paula Balcazar-Vargas

Project

View

Download

Elasticity and Sensitivity of the vital rates pack

Created: 2014-08-28 08:56:24 | Last updated: 2014-08-29 14:50:26

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow calculate the Elasticity and Sensitivity of the vital rates. The goal in both cases is to determine which vital rates have the most influence on population growth or λ.

3 items in this pack

Comments: 0 | Viewed: 69 times | Downloaded: 41 times

Tags:

Uploader

Christian

View

Download

Bonn 2014 Example Fasta Ids Windows Format

Created: 2014-08-27 13:43:56 | Last updated: 2014-09-02 07:59:09

Credits: Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a small list of Fasta IDs for testing workflows and tutorials.

File type: Plain text

Comments: 0 | Viewed: 30 times | Downloaded: 26 times

This File has no tags!

Taverna 2

Uploader

Donal Fellows

myExperiment Group Activity Report (1)

Prepares a report (three CSV files) on the activity of a group on myExperiment.

Created: 2014-08-26

Credits: Donal Fellows

Bioclipse Scripting Language

Uploader

Egon Willighagen

Finding nodes in Anopheles gambiae pathway... (1)

Download

Groovy script to find Anopheles g. metabolites encoded as GPML <Label> with OPSIN and provide ChemSpider identifiers.

Created: 2014-08-24

Credits: Egon Willighagen

Attributions: Extracts metabolites from GPML pathway files downloaded from WikiPathways

Uploader

Maria Paula Balcazar-Vargas

Project

View

Download

Demographic data Gentiana pneumonanthe 1987-1993

Created: 2014-08-22 12:01:38

Credits: Maria Paula Balcazar-Vargas Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of demographic data of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow Calculate and Plot abundance over the years (http://www.myexperiment.org/packs/664.html)This table containing the demographic data on a series of individuals during 7 years, from 1987 to 1993 (6 periods: 1987-1988, 1988-1989 etc....

File type: Excel workbook

Comments: 0 | Viewed: 66 times | Downloaded: 42 times

Tags:

Creator

Maria Paula Balcazar-Vargas

Project

View

Download

Calculate and Plot abundance over the years pack

Created: 2014-08-22 07:50:23 | Last updated: 2014-08-28 13:17:48

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow calculates and plots the abundance per stage per year from a list of matrices.

3 items in this pack

Comments: 0 | Viewed: 68 times | Downloaded: 31 times

Tags:

Creator

Maria Paula Balcazar-Vargas

Project

View

Download

Variance matrix pack

Created: 2014-08-21 13:07:20 | Last updated: 2014-08-28 13:53:33

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow estimates the variance matrix from a list of matrices.

8 items in this pack

Comments: 0 | Viewed: 58 times | Downloaded: 30 times

Tags:

Uploader

Maria Paula Balcazar-Vargas

Project

View

Download

Log-log plots of variance vs. sensitivity and CV vs....

Created: 2014-08-21 09:16:10

Credits: Maria Paula Balcazar-Vargas Mikolaj Krzyzanowski Jon Giddy Francisco Quevedo Gerard Oostermeijer

Attributions: Log-log plots of variance vs. sensitivity and CV vs. elasticity in matrix elements

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.This workflow creates log-log plots of both variance vs. sensitivity and CV vs. elasticity in matrix elements. Plots are based on Figure 2 in Pfister (1998).

File type: Adobe PDF

Comments: 0 | Viewed: 69 times | Downloaded: 40 times

Tags:

analysis
|
biovel
|
demography
|
gentiana pneumonanthe
|
log-log plot cv vs. elasticity in matrix elements
|
log-log plot of variance vs. sensitivity
|
matrix
|
matrix population models
|
package ‘popbio’ in r
|
stage matrix

Taverna 2

Uploader

Maria Paula Balcazar-Vargas

Project

Log-log plots of variance vs. sensitivity ... (1)

Download

This workflow creates log-log plots of both variance vs. sensitivity and CV vs. elasticity in matrix elements. Plots are based on Figure 2 in Pfister (1998). This workflow calculates as well the summary mean, variance, CV, sensitivities and elasticities of each matrix element of the submitted matrices. Please if you want to know more about this analyses please refer to: Pfister, C.A. 1998. Patterns of variance in stage-structured populations: Evolutionary predictions and ecological implica...

Created: 2014-08-21

Credits: Maria Paula Balcazar-Vargas Mikolaj Krzyzanowski Jon Giddy Francisco Quevedo Gerard Oostermeijer

Uploader

Maria Paula Balcazar-Vargas

Project

View

Download

Life Table Response Experiments Fixed design year ef...

Created: 2014-08-21 08:05:38

Credits: Maria Paula Balcazar-Vargas Jon Giddy Francisco Quevedo Gerard Oostermeijer

Attributions: Life Table Response Experiment year effect for multiple places

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Life Table Response Experiments Year Effect for Multiple Places workflow provides an environment to analyse two or more matrices (e.g., two or more matrices of different years from one place) at two or more different locations. The objective of this workflow is to determine the effects of the research years (2 or more) on λ. This workflow performs a fixed LTRE, o...

File type: Adobe PDF

Comments: 0 | Viewed: 66 times | Downloaded: 48 times

Tags:

All content