myExperiment - Workflows

Workflows

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User: Hamish McWilliam

Wsdl: http://www.ebi.ac.uk/ebisearch/service.ebi?wsdl

or http://www.ebi.ac.uk/webservices/citexplore/v1.0/service?wsdl

or http://blast.ncl.ac.uk:8080/TavernaBlastService/services/blast?wsdl

or http://soap.genome.jp/KEGG.wsdl

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Taverna 1

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Hamish McWilliam

EBI_CiteXplore (1)

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Perform a literature search using the EBI's CiteXplore service (http://www.ebi.ac.uk/citexplore/), and get the results in a minimal XML format containing the citation information (i.e. title, author, journal, etc.), the identifier of the citation in the source database (PubMed/Medline, Agricola, Patent Abstracts, CBA, CiteSeer, etc.) and information about abstract and full article availablity including URLs.

Created: 2008-07-09

Credits: Hamish McWilliam

Taverna 2

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Hamish McWilliam

EB-eye getAllResultIds and WSDbfetch fetch... (1)

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Get database entries for a query using EB-eye to perform the initial query against the database to get entry identifiers and using the identifiers with WSDbfetch to retrieve the entry data in the desired format. Note: this particular implementation is not suitable for queries which return large numbers of results.

Created: 2013-03-28

Credits: Hamish McWilliam

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