Workflows

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Showing 60 results. Use the filters on the left and the search box below to refine the results.
Type: Taverna 2 User: Peter Li
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Workflow Select items from list (1)

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This workflow pops up a window containing an input list of strings. The user is invited to select one or more strings for downstream processing.

Created: 2010-03-30

Credits: User Peter Li

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Workflow Copasi time simulation of SBML model (1)

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Uses the synchronous Copasi time simulation web service to predict the concentrations of species over a time period. The results from Copasi are provided in SBRML format which is visualised as a graph using an R script.

Created: 2010-03-26

Credits: User Peter Li

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Workflow SBML model optimisation (1)

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This workflow modifies reaction kinetic parameters against experimental data stored in the MCISB key results database

Created: 2010-03-26

Credits: User Peter Li

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Workflow SBML model parameterisation (1)

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This workflow parameterises an SBML model generated by the qualitative SBML model construction workflow

Created: 2010-03-26

Credits: User Peter Li

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Workflow Construction of skeleton SBML model using ... (1)

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This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given subsystem term.

Created: 2010-03-26 | Last updated: 2010-03-26

Credits: User Peter Li

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Workflow Construction of skeleton SBML model using ... (1)

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This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given list of yeast enzymes ORF numbers

Created: 2010-03-26 | Last updated: 2010-03-26

Credits: User Peter Li

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Workflow Sage bionetwork demo workflow (1)

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This workflow performs key driver analysis and displays the results in Cytoscape.

Created: 2010-03-22

Credits: User Peter Li

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Workflow Invocation of Gene Pattern modules using R (1)

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 A workflow to invoke a Gene Pattern module using an R script. Note that a FTP URL for the data to be analysed is required, not the data itself!

Created: 2010-03-19 | Last updated: 2010-03-19

Credits: User Peter Li

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Workflow Visualise KDA output data with Cytoscape (2)

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This workflow retrieves a data file on a web server directory and launches Cytoscape to visualise it.

Created: 2010-03-18 | Last updated: 2010-03-18

Credits: User Peter Li

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Workflow Log out from Alitora system (1)

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A nested workflow to be used for logging out of Alitora

Created: 2010-03-17 | Last updated: 2010-03-17

Credits: User Peter Li

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