myExperiment - Workflows

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Type: Taverna 1

Tag: pubmed

Wsdl: http://soap.genome.jp/KEGG.wsdl

or http://www.ebi.ac.uk/webservices/citexplore/v1.0/service?wsdl

or http://www.ebi.ac.uk/ebisearch/service.ebi?wsdl

or http://www.ebi.ac.uk/ontology-lookup/OntologyQuery.wsdl

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Taverna 1

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Saeedeh

Escherichia coli : From cDNA Microarray Ra... (1)

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This workflow takes in a CDNA raw file and a normalisation method then returns a series of images/graphs which represent the same output obtained using the R and bioconductor. Also retruned by this workflow are a list of the top differentialy expressed genes (size dependant on the number specified as input - geneNumber), which are then used to find the candidate pathways which may be influencing the observed changes in the microarray data. By identifying the candidate pathways, more detailed...

Created: 2008-05-08 | Last updated: 2008-05-12

Credits: Saeedeh Paul Fisher

Attributions: HUMAN Microarray CEL file to candidate pathways

Taverna 1

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Hamish McWilliam

EBI_CiteXplore (1)

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Perform a literature search using the EBI's CiteXplore service (http://www.ebi.ac.uk/citexplore/), and get the results in a minimal XML format containing the citation information (i.e. title, author, journal, etc.), the identifier of the citation in the source database (PubMed/Medline, Agricola, Patent Abstracts, CBA, CiteSeer, etc.) and information about abstract and full article availablity including URLs.

Created: 2008-07-09

Credits: Hamish McWilliam

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