Workflows

BiomartAndEMBOSSAnalysis (4)

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Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2009-09-15 | Last updated: 2015-01-26

Workflow for Protein Sequence Analysis (1)

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This workflow performs a generic protein sequence analysis. In order to do that a novel protein sequence enters into the software along with a list of known protein identifiers chosen by the biologist to perform a homology search, followed by a multiple sequence alignment and finally a phylogenetic analysis.

Created: 2008-01-09 | Last updated: 2008-01-09

Credits: M.B.Monteiro

Attributions: BLAST using DDBJ service Simplify a BLAST text file conditional branch

blast_simplifier.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

get_enzymes_by_gene (1)

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Retrieve all the EC numbers which are assigned to a given gene Input example: eco:b0002

Created: 2008-10-08

Credits: Franck Tanoh

extract_uniprot_embl_gi.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

gene_ontology_analysis.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

gene_ontology_analysis_2.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

parse_uniprot_2.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

remove_nulls.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher