Triplify KEGG database list [myexperiments:kegg_namespace2rdf]

Wsdl

Wsdl Operation

Script

String seperatorString = "\n";
if (seperator != void) {
	seperatorString = seperator;
}
StringBuffer sb = new StringBuffer();
for (Iterator i = stringlist.iterator(); i.hasNext();) {
	String item = (String) i.next();
	sb.append(item);
	if (i.hasNext()) {
		sb.append(seperatorString);
	}
}
concatenated = sb.toString();

Script

import java.util.regex.*;

Pattern thePat1 = Pattern.compile("(.*?)");
Pattern thePat2 = Pattern.compile("(.*?)");

String namespace, desc, uri, nsid, ntriples;

ntriples = "";

	Matcher matcher1 = thePat1.matcher(string);
	if (matcher1.find()) {
		namespace = matcher1.group(1);
		
		uri = "";
		nsid = "bm:ns:" + namespace;
		ntriples = ntriples + "\n\n" + uri + "   .";
		ntriples = ntriples + "\n" + uri + "   .";
		ntriples = ntriples + "\n" + uri + "  \"" + nsid + "\" .";
		ntriples = ntriples + "\n" + uri + "  \"http://www.genome.jp/dbget-bin/www_bfind_sub?mode=bfind&max_hit=1000&dbkey=" + namespace +"\" .";
		ntriples = ntriples + "\n" + uri + "  \"" + namespace +"\" .";
	}

	Matcher matcher2 = thePat2.matcher(string);
	if (matcher2.find()) {
		desc = matcher2.group(1);
		ntriples = ntriples + "\n" + uri + "  \"" + desc + "\" .";
		ntriples = ntriples + "\n" + uri + "  \"" + desc + " [" + nsid + "]\" .";
	
	}
	

Script

ntriples = "\n   .";
ntriples = ntriples + "\n  \"bm:ns:kegg\" .";
ntriples = ntriples + "\n  \"http://www.genome.jp/kegg/\" .";
ntriples = ntriples + "\n  \"kegg\" .";
ntriples = ntriples + "\n  \"Kyoto Encyclopedia of Genes and Genomes\" .";
ntriples = ntriples + "\n  \"Kyoto Encyclopedia of Genes and Genomes [bm:ns:kegg]\" .";

Script

output = string1 + string2;