genePattern data preprocessing

Created: 2010-05-24 22:42:38 Last updated: 2010-05-24 22:42:39

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preprocess data set using genePattern preProces service, the input <data /> should be in genePattern STATML format. Configuration parameters can be adjusted by changing the default

preprocess data set using genePattern preProces service, the input <data /> should be in genePattern STATML format.

preprocess data set using genePattern preProces service, the input <data /> should be in genePattern STATML format. Configuration parameters can be adjusted by changing the string constants.

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Authors (2)

Titles (1)

Descriptions (3)

Dependencies (0)

Inputs (1)

Name	Description
rawData	the raw data element (<data/>) to be preprocessed. <data/> should be in STATML format.

Processors (18)

Name	Type	Description
dataXML	xmlsplitter
PreprocessDatasetParameterSetXML1	xmlsplitter
preProcessTestData	wsdl	Wsdl http://node255.broad.mit.edu:6060/wsrf/services/cagrid/PreprocessDatasetSTATMLService?wsdl Wsdl Operation performAnalysis
parametersXML12	xmlsplitter
parametersXML11	xmlsplitter
preprocessDatasetParameterSetXML	xmlsplitter
ceiling	stringconstant	Value 2.1
columnThreshold	stringconstant	Value 0.0
filterFlag	stringconstant	Value false
logBaseTwo	stringconstant	Value false
maxSigmaBinning	stringconstant	Value 1
minChange	stringconstant	Value 3.0
minDelta	stringconstant	Value 100.0
numberOfColumnsAboveThreshold	stringconstant	Value 1
numExclude	stringconstant	Value 0
preprocessingFlag	stringconstant	Value no-disc-or-norm
probabilityThreshold	stringconstant	Value 1.0
threshold	stringconstant	Value 20.0

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Outputs (1)

Name	Description
preProcessedData

Datalinks (19)

Source	Sink
rawData	dataXML:Data
threshold:value	PreprocessDatasetParameterSetXML1:threshold
numExclude:value	PreprocessDatasetParameterSetXML1:numExclude
preprocessingFlag:value	PreprocessDatasetParameterSetXML1:preprocessingFlag
logBaseTwo:value	PreprocessDatasetParameterSetXML1:logBaseTwo
filterFlag:value	PreprocessDatasetParameterSetXML1:filterFlag
minDelta:value	PreprocessDatasetParameterSetXML1:minDelta
ceiling:value	PreprocessDatasetParameterSetXML1:ceiling
minChange:value	PreprocessDatasetParameterSetXML1:minChange
columnThreshold:value	PreprocessDatasetParameterSetXML1:columnThreshold
maxSigmaBinning:value	PreprocessDatasetParameterSetXML1:maxSigmaBinning
probabilityThreshold:value	PreprocessDatasetParameterSetXML1:probabilityThreshold
numberOfColumnsAboveThreshold:value	PreprocessDatasetParameterSetXML1:numberOfColumnsAboveThreshold
parametersXML11:output	preProcessTestData:parameters
preProcessTestData:parameters	parametersXML12:input
dataXML:output	parametersXML11:data
preprocessDatasetParameterSetXML:output	parametersXML11:preprocessDatasetParameterSet
PreprocessDatasetParameterSetXML1:output	preprocessDatasetParameterSetXML:PreprocessDatasetParameterSet
parametersXML12:Data	preProcessedData

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Taverna 2

Information Uploader

Wei Tan

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Wei Tan

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1715 downloads

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preprocess data before it is sent to any GenePattern services.

Created: 2010-08-14 | Last updated: 2010-08-14

Credits: Wei Tan

genePattern data preprocessing

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