Insert in local triplestore GeneID and KEGG pathway

Value

Script

output = string1 + string2;

Script

List split = new ArrayList();
if (!html.equals("")) {
	String regexString = "\n";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = html.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

import java.util.regex.*;

uris = new ArrayList();
Pattern thePat = Pattern.compile("

Script

URL inputURL = null;
if (base != void) {
  inputURL = new URL(new URL(base), url);
}
else {
  inputURL = new URL(url);
}
URLConnection con = inputURL.openConnection();
InputStream in = con.getInputStream();

InputStreamReader isr = new InputStreamReader(in);
Reader inReader = new BufferedReader(isr);

StringBuffer buf = new StringBuffer();
int ch;
while ((ch = inReader.read()) > -1) {
  buf.append((char)ch);
}
inReader.close();
contents = buf.toString();


//String NEWLINE = System.getProperty("line.separator");
//
//URL inputURL = null;
//if (base != void) {
//	inputURL = new URL(new URL(base), url);
//} else {
//	inputURL = new URL(url);
//}
//StringBuffer result = new StringBuffer();
//BufferedReader reader = new BufferedReader(new InputStreamReader(inputURL.openStream()));
//String line = null;
//while ((line = reader.readLine()) != null) {
//	result.append(line);
//	result.append(NEWLINE);
//}
//
//contents = result.toString();

Script

URL inputURL = null;
if (base != void) {
  inputURL = new URL(new URL(base), url);
}
else {
  inputURL = new URL(url);
}
URLConnection con = inputURL.openConnection();
InputStream in = con.getInputStream();

InputStreamReader isr = new InputStreamReader(in);
Reader inReader = new BufferedReader(isr);

StringBuffer buf = new StringBuffer();
int ch;
while ((ch = inReader.read()) > -1) {
  buf.append((char)ch);
}
inReader.close();
contents = buf.toString();


//String NEWLINE = System.getProperty("line.separator");
//
//URL inputURL = null;
//if (base != void) {
//	inputURL = new URL(new URL(base), url);
//} else {
//	inputURL = new URL(url);
//}
//StringBuffer result = new StringBuffer();
//BufferedReader reader = new BufferedReader(new InputStreamReader(inputURL.openStream()));
//String line = null;
//while ((line = reader.readLine()) != null) {
//	result.append(line);
//	result.append(NEWLINE);
//}
//
//contents = result.toString();

Value

Script

output = "http://localhost:8890/sparql?default-graph-uri=&query=SELECT+DISTINCT+%3Fs%0D%0AWHERE+{%0D%0A++%3Fs+%3Chttp%3A%2F%2Fbio2rdf.org%2Fns%2Fbio2rdf%23xGeneID%3E+%3Fo+.%0D%0A++FILTER(regex(%3Fs%2C+%22"+string1+"%22))+.%0D%0A}&format=text%2Fhtml&debug=on";

Script

output = "http://localhost:8890/sparql?default-graph-uri=&query=SELECT+DISTINCT+%3Fo%0D%0AWHERE+{%0D%0A++%3Fs+%3Chttp%3A%2F%2Fbio2rdf.org%2Fns%2Fbio2rdf%23xGeneID%3E+%3Fo+.%0D%0A++FILTER(regex(%3Fs%2C+%22"+string1+"%22))+.%0D%0A}&format=text%2Fhtml&debug=on";