Bio2RDF: Rdfiser for Bind protein interaction.
Created: 2009-02-19 05:10:23
Last updated: 2009-02-19 05:24:29
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Authors (1)
Titles (2)
| Bio2RDF: Rdfiser for Bind protein interaction. |
| Bio2RDF rdfiser for Bind protein interaction. |
Descriptions (0)
Dependencies (0)
Inputs (1)
| Name |
Description |
| bind_bmuri |
|
Processors (7)
| Name |
Type |
Description |
| bind_bmuri_for_test |
stringconstant |
Valueurn:bm:bind:194821 |
| gipair |
stringconstant |
Valuegipair |
| idSearch |
wsdl |
Wsdlhttp://soap.bind.ca/wsdl/bind.wsdlWsdl OperationidSearch |
| bindid |
stringconstant |
Valuebindid |
| Split_bmuri |
beanshell |
Scriptstring = new String(bmuri);
string = string.substring(7, string.length());
int i = string.lastIndexOf(":");
int j = string.length();
namespace = string.substring(0, i);
id = string.substring(i+1, j);
namespace_id = namespace + ":" + id; |
| idSearch_searchResultBean |
xmlsplitter |
|
| Bind_rdfiser |
beanshell |
ScriptString[] result = string.split("\n");
String string2 = result[1];
String[] result2 = string2.split(",");
String uri = " ";
String nsid = "bind:"+result2[0];
String title = result2[1].replace("\"","") + " -> " + result2[6].replace("\"","") + ", " + result2[5];
String triples = uri + " .\n";
triples = triples + uri + " \"" + title + " [" + nsid + "]\" .\n";
triples = triples + uri + " \"" + title + "\" .\n";
triples = triples + uri + " \"" + nsid + "\" .\n";
triples = triples + uri + " \"http://bio2rdf.org/html/"+nsid+"\" .\n";
triples = triples + uri + " .\n";
triples = triples + uri + " .\n";
triples = triples + uri + " .\n";
triples = triples + uri + " .\n";
triples = triples + uri + " .\n";
triples = triples + uri + " .\n";
triples = triples + uri + " .\n";
triples = triples + uri + " .\n";
triples = triples + uri + " .\n";
|
Beanshells (2)
| Name |
Description |
Inputs |
Outputs |
| Split_bmuri |
|
bmuri
|
id
|
| Bind_rdfiser |
|
string
|
triples
|
Outputs (1)
| Name |
Description |
| bind_triples |
|
Datalinks (7)
| Source |
Sink |
| gipair:value |
idSearch:returnType |
| Split_bmuri:id |
idSearch:id |
| bindid:value |
idSearch:idType |
| bind_bmuri |
Split_bmuri:bmuri |
| idSearch:searchResultBean |
idSearch_searchResultBean:input |
| idSearch_searchResultBean:records |
Bind_rdfiser:string |
| Bind_rdfiser:triples |
bind_triples |
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Paul Fisher
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