Multiple Protein Alignment Profiling(1)

Created: 2010-01-13 18:52:45 Last updated: 2010-11-17 14:13:20

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This workflow is designed to demonstrate the use of EMBOSS based Soaplab services from within the BioExtract Server. It begins by querying UniProt for "ops2_*". This input query string may be modified to meet the needs of the researcher. A sequences resulting in the query are simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

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Information Workflow Type

BioExtract Server

Information Uploader

Carol Lushbough

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Information Version 2 (of 4)

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A workflow version of the EMBOSS tutorial

Information Tags (7)

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alignment
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ebi
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emma
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genomics
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prettyplot
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profile
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tmap

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Information Statistics

5436 viewings

1693 downloads

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Version History

In chronological order:

A BioExtract Server Workflow version of the EMBOSS tutorial

Created by Carol Lushbough on Thursday 15 January 2009 14:37:01 (UTC)

Last edited by Carol Lushbough on Monday 08 June 2009 10:30:48 (UTC)
A BioExtract Server Workflow version of the EMBOSS tutorial

Created by Carol Lushbough on Thursday 20 August 2009 13:51:19 (UTC)

Last edited by Carol Lushbough on Wednesday 06 January 2010 22:07:49 (UTC)
Multiple Protein Alignment Profiling

Created by Carol Lushbough on Wednesday 13 January 2010 18:52:45 (UTC)

Last edited by Carol Lushbough on Wednesday 17 November 2010 14:11:37 (UTC)

Revision comment:

Functionality was added to allow the workflow to be executed within myExperiment
Multiple Protein Alignment Profiling(1)

Created by Carol Lushbough on Wednesday 17 November 2010 14:13:19 (UTC)

Revision comment:

Updated query to definition= opsin-2

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