Multi sequences NCBI BLAST
Created: 2008-12-05 02:57:21
Run a BLAST analysis using the EBI's WSNCBIBlast service (see http://www.ebi.ac.uk/Tools/webservices/services/ncbiblast). This workflow wraps the EBI_NCBI_BLAST workflow to provide a basic user interface which prompts for the required inputs: sequence file, database, BLAST program and user e-mail. Other parameters (e.g. matrix, sort, gap penalties, etc.) are allowed to default.
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Workflow Components
Inputs (1)
Name |
Description |
Sequence_file |
Select sequence file of fasta format |
Processors (6)
Name |
Type |
Description |
EBI_ncbiblast |
workflow |
|
Ask_for_email_address |
local |
Input your E-mail address |
Search_database_list |
local |
List of database names for select. |
Select_database |
local |
choose database |
Blast_program_list |
local |
List of blast program names for select. |
Select_blast_program |
local |
choose blast program |
Outputs (2)
Name |
Description |
Hit_id_list |
|
Blast_result |
text format result |
Links (8)
Source |
Sink |
Ask_for_email_address:answer |
EBI_ncbiblast:Email |
Blast_program_list:split |
Select_blast_program:valueList |
EBI_ncbiblast:Hit_id_list |
Hit_id_list |
EBI_ncbiblast:Text_result |
Blast_result |
Search_database_list:split |
Select_database:valueList |
Select_blast_program:answer |
EBI_ncbiblast:BLAST_program |
Select_database:answer |
EBI_ncbiblast:Search_database |
Sequence_file |
EBI_ncbiblast:Sequence |
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Comments (1)
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hiii Whybiocc,
I a not able to access this workflow on Taverna .Kindly help me out.
Nups