profilePublications_over_time

Created: 2017-04-19 09:30:17

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This workflow takes a list of arbitrary Europe PMC search queries and generates the corresponding profiles of the number of matching publications per publication year.

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

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Inputs (1)

Name	Description
Query	A list of arbitrary Europe PMC search queries.

Processors (9)

Name	Type	Description
Build_Queries_1900_2016	beanshell	Script int i=0; querylist = new ArrayList(); yearlist = new ArrayList(); for(year=1900; year<=2016; year++) { querylist.add(query + " AND (FIRST_PDATE:[" + year + "-01-01 TO " + year + "-12-31])"); yearlist.add(year + "\t"); i++; }
profileType	stringconstant	Value pub_type
Concatenate_two_strings	localworker	Script output = string1 + string2;
profilePublications	wsdl	Wsdl http://www.ebi.ac.uk/europepmc/webservices/soap?wsdl Wsdl Operation profilePublications
profilePublications_input	xmlsplitter
profilePublications_output	xmlsplitter
synonym	stringconstant	Value false
Extract_ALL	xpath	Xpath Expression /return/profileList/pubType[@name='ALL']/@count
Flatten_List	localworker	Script flatten(inputs, outputs, depth) { for (i = inputs.iterator(); i.hasNext();) { element = i.next(); if (element instanceof Collection && depth > 0) { flatten(element, outputs, depth - 1); } else { outputs.add(element); } } } outputlist = new ArrayList(); flatten(inputlist, outputlist, 1);

Beanshells (1)

Name	Description	Inputs	Outputs
Build_Queries_1900_2016		query	querylist yearlist

Outputs (1)

Name	Description
Publications_by_Year

Datalinks (11)

Source	Sink
Query	Build_Queries_1900_2016:query
Build_Queries_1900_2016:yearlist	Concatenate_two_strings:string1
Flatten_List:outputlist	Concatenate_two_strings:string2
profilePublications_input:output	profilePublications:parameters
Build_Queries_1900_2016:querylist	profilePublications_input:queryString
synonym:value	profilePublications_input:synonym
profileType:value	profilePublications_input:profileType
profilePublications:parameters	profilePublications_output:input
profilePublications_output:return	Extract_ALL:xml_text
Extract_ALL:nodelist	Flatten_List:inputlist
Concatenate_two_strings:output	Publications_by_Year

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Magnus Palmblad

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Magnus Palmblad

Information Attributions (0)

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None

Information Tags (5)

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Information Shared with Groups (1)

Bibliometrics and Scientometrics

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Information Favourited By (0)

No one

Information Statistics

1606 viewings

964 downloads

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Citations (0)

None

Version History

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profilePublications_over_time

Created by Magnus Palmblad on Wednesday 19 April 2017 09:30:14 (UTC)

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Created: 2015-08-19 | Last updated: 2015-09-07

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Created: 2015-09-07 | Last updated: 2015-09-10

Credits: Magnus Palmblad

profilePublications_over_time

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Workflow Components

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Wsdl

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Xpath Expression

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Other workflows that use similar services (15)