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EBI_InterproScan_NewServices

Created: 2014-04-03 09:48:29      Last updated: 2014-04-09 13:27:22

This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

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Taverna 2

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4011?size=60x60 Gb Alex Nenadic

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Version History

In chronological order:

  1. EBI_InterproScan_NewServices

    Created by Alex Nenadic on Thursday 03 April 2014 09:48:26 (UTC)

  2. EBI_InterproScan_NewServices

    Created by Alex Nenadic on Wednesday 09 April 2014 13:27:22 (UTC)



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  • 1404?size=60x60 Gb Christian
    		Thursday 10 April 2014 10:22:48 (UTC)

    I added the example value sequence as a file for testing with Taverna CommandLine.

    It can be found at: http://www.myexperiment.org/files/1146.html



Workflow Other workflows that use similar services (3)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow EBI_InterproScan_NewServices (2)

Thumb
This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.

Created: 2012-04-05 | Last updated: 2014-04-09

Credits: User Alan Williams

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow EBI_InterproScan_broken (1)

Thumb
This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. Note that this workflow is deliberately broken

Created: 2014-07-09

Credits: User Alan Williams User Katy Wolstencroft User Hamish McWilliam

Attributions: Workflow EBI_InterproScan_NewServices

Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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