MergePeptides
Created: 2014-03-31 11:04:34
Last updated: 2014-03-31 11:05:47
A example Galaxy pipeline for removing redundancy in peptides within quantitative proteomics analysis.
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Workflow Components
Steps (18)
| Name |
Tool |
Description |
| Parse experiment metadata (flat-file) |
PEXP |
|
| Import observation data for an experiment |
ImportDataFromExp |
|
| Apply statistical tests |
ApplyStatistics |
|
| Export as tab delimited file |
TEXPORT |
|
| Merge alternative tryptic-digestion |
MergeAlternativeTrypticDigests |
|
| Apply statistical tests |
ApplyStatistics |
|
| Export as tab delimited file |
TEXPORT |
|
| Apply statistical tests |
ApplyStatistics |
|
| Export as tab delimited file |
TEXPORT |
|
| Export as tab delimited file |
TEXPORT |
|
| Hide unmodified |
RemoveUnmodifiedPeptides |
|
| Merge identical # ids |
MergeIdenticalPeptides |
|
| Filter redundant peaks |
FilterRedundantPeaks |
|
| Apply statistical tests |
ApplyStatistics |
|
| Merge charge varients |
MergeChargeStates |
|
| Apply statistical tests |
ApplyStatistics |
|
| Export as tab delimited file |
TEXPORT |
|
| Merge all alternative modifications |
MergeAlternativeModifications |
|
Outputs (19)
| Name |
Type |
| output_file1 |
xml |
| output |
xml |
| mqoutput |
tabular |
| output |
xml |
| output_file1 |
txt |
| output |
xml |
| output |
xml |
| output_file1 |
txt |
| output |
xml |
| output_file1 |
txt |
| output_file1 |
txt |
| output |
xml |
| output |
xml |
| output |
xml |
| output |
xml |
| output |
xml |
| output |
xml |
| output_file1 |
txt |
| output |
xml |
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licensed under:
Version 1
(of 1)
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