MrBayesPPtest

Created: 2013-12-11 16:12:55 Last updated: 2014-11-27 09:36:56

Download Workflow

Flat list of the Log port

Preview

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/3952/download?version=5
[ More Info Expand ]

Workflow Components

Authors (0)

Titles (0)

Descriptions (0)

Dependencies (0)

Inputs (4)

Name	Description
MrBayesOutputFolder
NameRun
SampleSize
Burnin

Processors (8)

Name	Type	Description
MakeHistogram	workflow
JSTAsync1	component	Component JSTAsync1
Theshold2buildHSD	stringconstant	Value 0.05
Concatenate_Four_strings	localworker	Script output = nameRun + ' ' +pathInputMrBayes + ' ' +numberSample + ' '+burninvalue;
ServiceName	stringconstant	Value MrBayesPPtest
Workflow57_2	workflow
Logger_2	localworker	Script output = "Application:"+Name +"\n"+"JobID:" +JobID+"\n"+"StdError:"+StdError;
Flatten_List	localworker	Script flatten(inputs, outputs, depth) { for (i = inputs.iterator(); i.hasNext();) { element = i.next(); if (element instanceof Collection && depth > 0) { flatten(element, outputs, depth - 1); } else { outputs.add(element); } } } outputlist = new ArrayList(); flatten(inputlist, outputlist, 1);

Beanshells (0)

Outputs (4)

Name	Description
NiceXML
Plot
PPtestDetails
Log

Datalinks (17)

Source	Sink
JSTAsync1:Standardoutput	MakeHistogram:XML
Theshold2buildHSD:value	MakeHistogram:Alpha
Concatenate_Four_strings:output	JSTAsync1:Argument
ServiceName:value	JSTAsync1:Name
SampleSize	Concatenate_Four_strings:numberSample
NameRun	Concatenate_Four_strings:nameRun
MrBayesOutputFolder	Concatenate_Four_strings:pathInputMrBayes
Burnin	Concatenate_Four_strings:burninvalue
JSTAsync1:Standardoutput	Workflow57_2:xml
JSTAsync1:JobID	Logger_2:JobID
JSTAsync1:StandardError	Logger_2:StdError
ServiceName:value	Logger_2:Name
Logger_2:output	Flatten_List:inputlist
Workflow57_2:vedi	NiceXML
MakeHistogram:plot	Plot
JSTAsync1:Output_Path	PPtestDetails
Flatten_List:outputlist	Log

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Saverio Vicario

Information Component Validity

Information License

All versions of this Workflow are licensed under:

Information Version 5 (of 13)

View version:

Information Credits (0)

(People/Groups)

None

Information Attributions (0)

(Workflows/Files)

None

Information Tags (1)

Uploader tags

component

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (1)

BayesianPhylogeneticInference

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

9493 viewings

2019 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

MrBayesPPtest

Created by Saverio Vicario on Wednesday 11 December 2013 16:12:53 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Wednesday 11 December 2013 21:32:20 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Thursday 12 December 2013 11:59:00 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Thursday 12 December 2013 12:14:57 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Monday 16 December 2013 14:31:04 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Friday 10 January 2014 15:51:17 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Friday 10 January 2014 16:34:36 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Wednesday 15 January 2014 14:25:29 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Tuesday 04 February 2014 09:59:55 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Tuesday 04 February 2014 14:34:15 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Wednesday 19 March 2014 13:32:59 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Friday 13 June 2014 11:47:23 (UTC)
MrBayesPPtest

Created by Saverio Vicario on Thursday 27 November 2014 09:36:56 (UTC)