Biome-BGC ESI version 1.4.1
Created: 2013-08-12 12:20:48
Last updated: 2014-10-04 15:07:16
Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water pools and fluxes of different terrestrial ecosystems. The BBGC Ecosystem Service Indicators (ESI) Regulation executes a single simulation run, which consists of a so called
spinup and
normal simulation phases pipelined, than quantifies and derives important ecosystem service indicator measures.
The simulations require specific parameter inputs like:
- SPINUP and NORMAL initialization files (INI) defining all settings required to simulation
The SPINUP and NORMAL INI files refers to
- meteorology dataset file (METDATA) - daily meteorology input
- ecophysiological constants file (EPC) - ecosystem functioning parameters
- annual atmospheric CO2 concentration file (CO2 - optional)
- annual nitrogen deposition file (NDEF - optional)
- site/soil parameters
- output control settings of Biome-BGC variables
The
Biome-BGC Projects database was developed to easy prepare, manage and share all of the above mentioned datasets and provide interaction with Taverna workflows. Learn more about BBGCDB at
http://ecos.okologia.mta.hu/bbgcdb/.
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Workflow Components
Authors (1)
Dora KRASSER, Peter ITTZES, Ferenc HORVATH |
Titles (1)
Biome-BGC ESI Regulation, test & demo version 1.0 |
Descriptions (1)
<b>Biome-BGC</b> is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water pools and fluxes of different terrestrial ecosystems. The BBGC Ecosystem Service Indicators (ESI) Regulation executes a single simulation run, which consists of a so called <b>spinup</b> and <b>normal</b> simulation phases pipelined, than quantifies and derives important ecosystem service indicator measures.
The simulations require specific parameter inputs like:
- SPINUP and NORMAL initialization files (INI) defining all settings required to simulation
The SPINUP and NORMAL INI files refers to
- meteorology dataset file (METDATA) - daily meteorology input
- ecophysiological constants file (EPC) - ecosystem functioning parameters
- annual atmospheric CO2 concentration file (CO2 - optional)
- annual nitrogen deposition file (NDEF - optional)
- site/soil parameters
- output control settings of Biome-BGC variables
The <b>Biome-BGC Projects database</b> was developed to easy prepare, manage and share all of the above mentioned datasets and provide interaction with Taverna workflows. Learn more about BBGCDB at http://ecos.okologia.mta.hu/bbgcdb/.
|
Dependencies (0)
Processors (8)
Name |
Type |
Description |
Interaction |
interaction |
|
ess_regulation |
rest |
|
GetURL |
beanshell |
Scripturl="http://ecos.okologia.mta.hu/bbgcdb/node/"+prID; |
message |
beanshell |
Scriptout1="The Ecosystem Service Indicator project (project id: "+prID+") has been submitted."; |
trimID |
beanshell |
Scriptout1=inputstring.trim(); |
Split_string_into_string_list_by_regular_expression |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = ",";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
Text_constant |
stringconstant |
Value
|
get_items |
beanshell |
Scriptout1=list.get(0);
if (list.size()>1) {
out2=list.get(1);
}
else {
out2="";
}
if (list.size()>2) {
out3=list.get(2);
}
else {
out3="";
}
|
Beanshells (4)
Name |
Description |
Inputs |
Outputs |
GetURL |
|
prID
|
url
|
message |
|
prID
|
out1
|
trimID |
|
inputstring
|
out1
|
get_items |
|
list
|
out1
out2
out3
|
Outputs (5)
Name |
Description |
BBGC_ProjectID |
A unique numeric ID to identify the Biome-BGC ESI Regulation project run in the BBGC database.
|
BBGC_Project_URL |
The unique URL of the Biome-BGC Project database record created by the workflow run. Name, description, settings and all the results of the simulation can be find here.
|
BBGC_Message |
Message of the Ecosystem Service Indicators (ESI) Regulation workflow about launching the simulation run.
|
ESI_REGU_30 |
The <strong>Biome-BGC ESI Regulation 30</strong> is a standard summary of the results in text CSV format. The Biome-BGC ESI Regulation web service calculates and prints out the 30-year-averages of <strong>ESI LIVEBIO</strong> – live biomass: proxy for cleansing potential, kgC/m2; <strong>ESI SOILPROT</strong> – sum of living and dead biomass protecting the soil against erosion , kgC/m2; <strong>ESI DESDWO</strong> – damping of ecosystem daily water outflow, unitless; <strong>ESI DECOMP</strong> – litter and coarse woody debris decomposition rate, kgC/m2/yr; <strong>ESI HUMIF</strong> – humification in the soil, kgC/m2/yr; <strong>ESI annNPP</strong> – annual net primary production, kgC/m2; <strong>ESI TCS</strong> – total carbon stock, kgC/m2; <strong>ESI annET</strong> - energy absorption by evapotranspiration,, kgH2O/m2/yr.
|
ESI_REGU_6190 |
Biome-BGC ESI Regulation ESI LIVEBIO, SOILPROT, DESDWO, DECOMP, HUMIF, annNPP, TCS and annET indicators averaged to 1961-1990.
|
Datalinks (12)
Source |
Sink |
Interaction:myOutput |
ess_regulation:nid |
get_items:out1 |
GetURL:prID |
get_items:out1 |
message:prID |
ess_regulation:responseBody |
trimID:inputstring |
trimID:out1 |
Split_string_into_string_list_by_regular_expression:string |
Text_constant:value |
Split_string_into_string_list_by_regular_expression:regex |
Split_string_into_string_list_by_regular_expression:split |
get_items:list |
get_items:out1 |
BBGC_ProjectID |
GetURL:url |
BBGC_Project_URL |
message:out1 |
BBGC_Message |
get_items:out2 |
ESI_REGU_30 |
get_items:out3 |
ESI_REGU_6190 |
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