Biome-BGC CARBON 1.2

None

url="http://ecos.okologia.mta.hu/bbgcdb/node/"+prID;
out1="The Biome-BGC CARBON single run project (ID: "+prID.trim()+") has been submitted and executed successfully :)";
prID=id1.trim();
BufferedReader getReader (String fileUrl, String encoding) throws IOException {
		InputStreamReader reader;
		try {
			if (encoding == null) {
				reader = new FileReader(fileUrl);
			} else {
				reader = new InputStreamReader(new FileInputStream(fileUrl),encoding); 
			}
		}
		catch (FileNotFoundException e) {
			// try a real URL instead
			URL url = new URL(fileUrl);
			if (encoding == null) {
				reader = new InputStreamReader (url.openStream());
			} else {
				reader = new InputStreamReader (url.openStream(), encoding);
			}
		}
		return new BufferedReader(reader);
	}


StringBuffer sb = new StringBuffer(4000);

if (encoding == void) {
	encoding = null;
}

BufferedReader in = getReader(fileurl, encoding);
String str;
String lineEnding = System.getProperty("line.separator");

while ((str = in.readLine()) != null) {
	sb.append(str);
	sb.append(lineEnding);
}
in.close();
filecontents = sb.toString();
  

if (status.indexOf("closed")>-1) {
fileurl="http://ecos.okologia.mta.hu/bbgc_sr/"+prID+"/out_ann.txt";	
}

Name	Type	Description
Interaction	interaction	Interaction Page http://ecos.okologia.mta.hu/bbgcdb/node/add/project4
submit_singlerun	rest
GetURL	beanshell	Script url="http://ecos.okologia.mta.hu/bbgcdb/node/"+prID;
message	beanshell	Script out1="The Biome-BGC CARBON single run project (ID: "+prID.trim()+") has been submitted and executed successfully :)";
trimID	beanshell	Script prID=id1.trim();
Read_Text_File	localworker	Script BufferedReader getReader (String fileUrl, String encoding) throws IOException { InputStreamReader reader; try { if (encoding == null) { reader = new FileReader(fileUrl); } else { reader = new InputStreamReader(new FileInputStream(fileUrl),encoding); } } catch (FileNotFoundException e) { // try a real URL instead URL url = new URL(fileUrl); if (encoding == null) { reader = new InputStreamReader (url.openStream()); } else { reader = new InputStreamReader (url.openStream(), encoding); } } return new BufferedReader(reader); } StringBuffer sb = new StringBuffer(4000); if (encoding == void) { encoding = null; } BufferedReader in = getReader(fileurl, encoding); String str; String lineEnding = System.getProperty("line.separator"); while ((str = in.readLine()) != null) { sb.append(str); sb.append(lineEnding); } in.close(); filecontents = sb.toString();
GetFileurl	beanshell	Script if (status.indexOf("closed")>-1) { fileurl="http://ecos.okologia.mta.hu/bbgc_sr/"+prID+"/out_ann.txt"; }
check_status	rest

Name	Inputs	Outputs
GetURL	prID	url
message	prID	out1
trimID	id1	prID
GetFileurl	prID status	fileurl

Name	Description
BBGCDB_Project_ID	A unique numeric ID to identify the Biome-BGC project run in the BBGC database.
BBGCDB_Project_URL	The URL of the Biome-BGC Project database record created by the workflow.
BBGCDB_Message	Output message of the workflow about the run.
Summary_Output	The Biome-BGC Annual Summary Output is a standard summary of the results in ASCI TXT format, provided by the simulation. It prints out the annual total precipitation, average air temperature, maximum value of projected leaf area index, total evapotranspiration, total outflow, total net primary production and the annual total net biome production.

Source	Sink
Interaction:myOutput	submit_singlerun:nid
trimID:prID	GetURL:prID
trimID:prID	message:prID
submit_singlerun:responseBody	trimID:id1
GetFileurl:fileurl	Read_Text_File:fileurl
trimID:prID	GetFileurl:prID
check_status:responseBody	GetFileurl:status
trimID:prID	check_status:nid
trimID:prID	BBGCDB_Project_ID
GetURL:url	BBGCDB_Project_URL
message:out1	BBGCDB_Message
Read_Text_File:filecontents	Summary_Output

Biome-BGC CARBON 1.2

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