Blast_and_Interproscan
This workflow performs an NCBI blast at the EBI. It accepts a protein sequence as input. Default values have been set for the search database (Uniprot), the number of hits to return (10), and all scoring and matrix options. These can be changed in the workflow by altering the string constant values if required. The sequences for the top 10 hits are retrieved from the UniProt database and analysed using InterproScan (also from the EBI) to determine functional domains and motifs in each sequence. The results are shown in a graphical format. This workflow uses the new EBI services. They are asynchronous and so require looping over the nested workflows (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration.
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Created: 2010-11-29 | Last updated: 2013-03-28
Attributions:
EBI_NCBI_BLAST
NCBI BLAST (SOAP)
Created: 2010-11-29 | Last updated: 2013-03-28
Credits:
Hamish McWilliam
Attributions:
EBI_NCBI_BLAST
NCBI BLAST (SOAP)
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