SNP_ID2EntrezGene_ID

Script

import java.util.*;

String [] line = string.split("\t");
out1=line[0].trim();

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i]);
	}
}

Value

Script

flatten(inputs, outputs, depth) {
	for (i = inputs.iterator(); i.hasNext();) {
	    element = i.next();
		if (element instanceof Collection && depth > 0) {
			flatten(element, outputs, depth - 1);
		} else {
			outputs.add(element);
		}
	}
}

outputlist = new ArrayList();

flatten(inputlist, outputlist, 1);

Script

flatten(inputs, outputs, depth) {
	for (i = inputs.iterator(); i.hasNext();) {
	    element = i.next();
		if (element instanceof Collection && depth > 0) {
			flatten(element, outputs, depth - 1);
		} else {
			outputs.add(element);
		}
	}
}

outputlist = new ArrayList();

flatten(inputlist, outputlist, 1);

Script

import java.util.*;

List tmp_end = new ArrayList();
List tmp_start = new ArrayList();
width =Integer.parseInt(in1.get(0));

int out_end=0;
int out_start=0;
for(int i=0; i < in2.size(); i++) {
           value_pos = Integer.parseInt(in2.get(i));
	   out_end = value_pos + width;
	   out_start = value_pos - width;	
	

		
    tmp_end.add(out_end);
    tmp_start.add(out_start);
 }

end_out = tmp_end;
start_out = tmp_start;
chr_out = chr_in;

Value