swiss_and_name_seq.xml

Created: 2008-07-12 10:07:42 Last updated: 2008-07-12 10:07:57

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Workflow Components

Inputs (1)

Name	Description
genes_in_region

Processors (12)

Name	Type	Description
options	stringconstant
getGeneInfo	arbitrarywsdl
split_by_regex	local
parse_gene_name	beanshell
parse_swiss	beanshell
options2	stringconstant
regex	stringconstant
parse_ddbj_gene_info	soaplabwsdl	extract information from geneGeneInfo processor at http://xml.nig.ac.jp/wsdl/Ensembl.wsdl
parse_gene_info_2	soaplabwsdl	extract information from geneGeneInfo processor at http://xml.nig.ac.jp/wsdl/Ensembl.wsdl
parse_gene_info_3	soaplabwsdl	extract information from geneGeneInfo processor at http://xml.nig.ac.jp/wsdl/Ensembl.wsdl
options3	stringconstant
parse_sequence	beanshell

Beanshells (3)

Name	Inputs	Outputs
parse_gene_name	input	output
parse_swiss	input	output
parse_sequence	input	output

Outputs (4)

Name	Description
swiss_ids
gene_info
gene_name
sequences

Links (16)

Source	Sink
genes_in_region	split_by_regex:string
getGeneInfo:Result	parse_ddbj_gene_info:file_direct_data
getGeneInfo:Result	parse_gene_info_2:file_direct_data
getGeneInfo:Result	parse_gene_info_3:file_direct_data
options2:value	parse_gene_info_2:options
options3:value	parse_gene_info_3:options
parse_ddbj_gene_info:output	parse_swiss:input
parse_gene_info_2:output	parse_gene_name:input
parse_gene_info_3:output	parse_sequence:input
getGeneInfo:Result	gene_info
options:value	parse_ddbj_gene_info:options
parse_gene_name:output	gene_name
parse_sequence:output	sequences
parse_swiss:output	swiss_ids
regex:value	split_by_regex:regex
split_by_regex:split	getGeneInfo:geneId

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Paul Fisher

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None

Information Tags (1)

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benchmarks

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Information Featured In Packs (1)

Paul Fisher workflows for benchmarks PR and CA2

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Information Statistics

1776 viewings

1886 downloads

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Version History

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swiss_and_name_seq.xml

Created by Antoon Goderis on Saturday 12 July 2008 10:07:42 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 10:07:57 (UTC)