interpro_url.xml

Created: 2008-07-12 10:03:35 Last updated: 2008-07-12 20:19:04

Download Workflow

An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/293/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (0)

Processors (6)

Name	Type	Description
REGEX_GROUP	stringconstant
INTERPRO_REGEX	stringconstant
INTERPRO_URL	stringconstant
INTERPRO_RESULT_FILTER	local
interpro_ids	stringconstant
CONCAT_INTERPRO_URL	local

Beanshells (0)

Outputs (1)

Name	Description
interproIDs

Links (6)

Source	Sink
INTERPRO_REGEX:value	INTERPRO_RESULT_FILTER:regex
INTERPRO_RESULT_FILTER:filteredlist	CONCAT_INTERPRO_URL:string2
INTERPRO_URL:value	CONCAT_INTERPRO_URL:string1
REGEX_GROUP:value	INTERPRO_RESULT_FILTER:group
interpro_ids:value	INTERPRO_RESULT_FILTER:stringlist
CONCAT_INTERPRO_URL:output	interproIDs

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Paul Fisher

Information Attributions (0)

(Workflows/Files)

None

Information Tags (1)

Uploader tags

benchmarks

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (1)

Paul Fisher workflows for benchmarks PR and CA2

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1836 viewings

2000 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

interpro_url.xml

Created by Antoon Goderis on Saturday 12 July 2008 10:03:35 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 20:19:04 (UTC)

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.