extract_uniprot_embl_gi.xml

Created: 2008-07-12 09:38:57 Last updated: 2008-07-12 09:39:12

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Workflow Components

Inputs (1)

Name	Description
SearchTerm

Processors (4)

Name	Type	Description
parse_embl_id	beanshell
fieldName	stringconstant
parse_uniprot	soaplabwsdl	Extract information from a Uniprot text file including PubMed, InterPro, Pfam and other related accession numbers
Uniprot_search	soaplabwsdl	To be added

Beanshells (1)

Name	Description	Inputs	Outputs
parse_embl_id		input	output

Outputs (3)

Name	Description
uniprot_record
parsed_data
Embl_Acc

Links (7)

Source	Sink
SearchTerm	Uniprot_search:searchterm
Uniprot_search:result	parse_uniprot:file_direct_data
fieldName:value	Uniprot_search:fieldname
parse_uniprot:output	parse_embl_id:input
Uniprot_search:result	uniprot_record
parse_embl_id:output	Embl_Acc
parse_uniprot:output	parsed_data

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Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Paul Fisher

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None

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benchmarks

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Paul Fisher workflows for benchmarks PR and CA2

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Information Attributed By (1)

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KEGG Pathways and Additional Information from BLAST

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Information Statistics

2333 viewings

2090 downloads

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Version History

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extract_uniprot_embl_gi.xml

Created by Antoon Goderis on Saturday 12 July 2008 09:38:57 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 09:39:12 (UTC)

Reviews (1)

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Pimtemp...

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Created: 2009-06-09 14:55:12 | Updated: 2009-06-09 14:55:12

Hey Antoon, a few weeks ago i tried your workflow and it worked perfectly. Sadly it doesn´t anymore, i guess the ´parse uniprot´ part quitted working. Do you have an alternative for extracting information out of the uniprot database? thanks, Pim

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Antoon Goderis

Hi Pim

check out www.biocatalogue.org for alternative services or failing that, contact the author of the workflow, Paul Fisher

Antoon

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