sub_gene_info_to_uniprot.xml

Created: 2008-07-12 09:36:15 Last updated: 2008-07-12 09:36:33

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Workflow Components

Inputs (0)

Processors (11)

Name	Type	Description
regex_2	stringconstant
Concatenate_two_strings2	local
split_by_regex_2	local
Remove_gene_nulls	workflow
Remove_swiss_nulls	workflow
Parse_gene_name	workflow
Uniprot_record_search	workflow
Ensembl_gene_info	workflow
Parse_swiss_ids	workflow
parse_uniprot	soaplabwsdl	Extract information from a Uniprot text file including PubMed, InterPro, Pfam and other related accession numbers
ID_input	stringconstant

Beanshells (4)

Name	Inputs	Outputs
remove_Nulls	input	output
remove_Nulls	input	output
parse_gene_info	input	output
parse_swiss	input	output

Outputs (1)

Name	Description
summary_data

Links (12)

Source	Sink
Ensembl_gene_info:gene_info	Concatenate_two_strings2:string1
Ensembl_gene_info:gene_info	Parse_gene_name:gene_info
Ensembl_gene_info:gene_info	Parse_swiss_ids:gene_info
ID_input:value	Ensembl_gene_info:genes_in_region
Parse_gene_name:gene_name	Remove_gene_nulls:input_string
Parse_swiss_ids:swiss_ids	Remove_swiss_nulls:input_string
Remove_swiss_nulls:removed_nulls	split_by_regex_2:string
Uniprot_record_search:uniprot_record	parse_uniprot:file_direct_data
parse_uniprot:output	Concatenate_two_strings2:string2
regex_2:value	split_by_regex_2:regex
split_by_regex_2:split	Uniprot_record_search:swissprot_id
Concatenate_two_strings2:output	summary_data

Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Paul Fisher

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None

Information Tags (1)

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Information Featured In Packs (1)

Paul Fisher workflows for benchmarks PR and CA2

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Information Favourited By (0)

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Information Statistics

1914 viewings

1938 downloads

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Citations (0)

None

Version History

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sub_gene_info_to_uniprot.xml

Created by Antoon Goderis on Saturday 12 July 2008 09:36:15 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 09:36:33 (UTC)