This workflow uses one or more services that are deprecated as of 31st December 2012 (almost 12 years ago), and may no longer function. Show details...

geneId_to_pathway.xml

Created: 2008-07-12 09:16:00 Last updated: 2008-07-12 11:48:03

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Workflow Components

Inputs (1)

Name	Description
gene

Processors (7)

Name	Type	Description
merge_pathways	local
mergePathways_2	local
lister	arbitrarywsdl
split_gene_ids	beanshell
get_pathways_by_genes	arbitrarywsdl
Kegg_gene_ids_all_species	arbitrarywsdl
Add_ncbi_to_string	workflow

Beanshells (2)

Name	Description	Inputs	Outputs
add_ncbi_to_string		input	output
split_gene_ids		input	output

Outputs (1)

Name	Description
merged_kegg_pathways

Links (8)

Source	Sink
Add_ncbi_to_string:Kegg_strings	Kegg_gene_ids_all_species:string
Kegg_gene_ids_all_species:return	split_gene_ids:input
gene	Add_ncbi_to_string:Gi_numbers
get_pathways_by_genes:return	merge_pathways:stringlist
lister:listerReturn	get_pathways_by_genes:genes_id_list
merge_pathways:concatenated	mergePathways_2:stringlist
mergePathways_2:concatenated	merged_kegg_pathways
split_gene_ids:output	lister:file

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Information Workflow Type

Taverna 1

Information Uploader

Antoon Goderis

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Paul Fisher

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Information Tags (1)

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benchmarks

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Information Featured In Packs (1)

Paul Fisher workflows for benchmarks PR and CA2

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Information Statistics

1935 viewings

1924 downloads

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Version History

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geneId_to_pathway.xml

Created by Antoon Goderis on Saturday 12 July 2008 09:16:00 (UTC)

Last edited by Antoon Goderis on Saturday 12 July 2008 11:48:03 (UTC)

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