EBI_PICR_Sequence_to_ID

Created: 2008-06-08 14:03:07

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Map a protein sequence to the known identifiers of identical sequences.

Uses the EBI's PICR web service (see http://www.ebi.ac.uk/Tools/picr/) to perform the mapping.

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Workflow Components

Inputs (1)

Name	Description
Sequence	Protein seqence in fasta format, to get identifiers for.

Processors (3)

Name	Type	Description
getUPIForSequence	arbitrarywsdl	Get UPI information from a sequence in fasta format.
PICR_input_params	local	Construct request structure.
Unwrap_PICR_result	local	Unwrap response structure.

Beanshells (0)

Outputs (1)

Name	Description
PICR_result	XML structure describing the sequence and the database and identifers of identical sequences.

Links (4)

Source	Sink
PICR_input_params:output	getUPIForSequence:parameters
Sequence	PICR_input_params:sequence
getUPIForSequence:parameters	Unwrap_PICR_result:input
Unwrap_PICR_result:getUPIForSequenceReturn	PICR_result

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Taverna 1

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Hamish McWilliam

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Hamish McWilliam

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EBI_PICR_Sequence_to_UniParc_and_InterPro

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2597 viewings

2392 downloads

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