EBI_PICR_Sequence_to_UniParc_and_InterPro
Given a protein sequence get some information about it:
- Does this protein sequence occur in any of the protein databases (e.g. UniProtKB, PDB, etc.). Using the PICR web service (see http://www.ebi.ac.uk/Tools/picr/) map the sequence to a UniParc identifer.
- Which entries in the protein databases have this sequence. Using the UniParc database (see http://www.ebi.ac.uk/uniprot/database/DBDescription.html#uniparc) a summary of the databases and the entries in those databases which have this sequence is obtained.
3. Does any protein domain or family information exist for this sequence. Using the InterPro Matches UniParc database (see http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+LibInfo+-lib+IPRMC_UNIPARC) a summary of the known signature matches is obtained.
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Created: 2008-06-08
Credits: Hamish McWilliam
Protein_alignment_transmembrane (1)
Created: 2008-06-01
Credits: Hamish McWilliam
Attributions: EBI_FASTA EBI_ClustalW2 EBI_dbfetch_fetchBatch
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