DAS features retrieval and parsing with JDAS

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i].replaceAll(" ",""));
	}
}

Value

Script

import uk.ac.ebi.das.jdas.schema.features.DASGFF;
import uk.ac.ebi.das.jdas.schema.features.SEGMENT;
import uk.ac.ebi.das.jdas.adapters.features.DasGFFAdapter;
import uk.ac.ebi.das.jdas.adapters.features.FeatureAdapter;

import javax.xml.bind.JAXBContext;
import javax.xml.bind.Unmarshaller;
import java.io.ByteArrayInputStream;

/* Use JAXB and JDAS to parse the DAS format*/
String featuresText = "";
String newline = "\n"; 
String tab = "\t"; 
String header = "ID" + tab + "LABEL" + tab + "TYPE CV I" + tab + "METHOD CV I" + tab + "START" + tab + "END";

ByteArrayInputStream input = new ByteArrayInputStream(featuresXML.getBytes());
JAXBContext jc = JAXBContext.newInstance("uk.ac.ebi.das.jdas.schema.features");
Unmarshaller unmarshaller = jc.createUnmarshaller();
DasGFFAdapter dasGFF = new DasGFFAdapter((DASGFF) unmarshaller.unmarshal(input));
DasGFFAdapter.SegmentAdapter segment = dasGFF.getGFF().getSegment().get(0);

/* Chose what to print and how to print it */
featuresText += header + newline;
for (FeatureAdapter feature:segment.getFeature()) {
	featuresText += feature.getId()  + tab;
	featuresText += feature.getLabel()  + tab;
	featuresText += feature.getType().getCvId()  + tab;
	featuresText += feature.getMethod().getCvId()  + tab;
	featuresText += String.valueOf(feature.getStart())  + tab;
	featuresText += String.valueOf(feature.getEnd())  + tab;
	featuresText += newline;
}