EBI PICR, find cross-references for protein accessions

Wsdl

Wsdl Operation

Script

String results = new String();
String newline = "\n";
String tab = "\t";

 for (int a = 0; a < crossReferenceAccs.size(); a++) {
    Object list = crossReferenceAccs.get(a);
    for (int b = 0; b < list.size(); b++) {
         Object list2 = (Object)list.get(b);
         for (int c = 0; c < list2.size(); c++) {
    	     String cR = (String)list2.get(c);
              if(cR.length() != 0){
                  results += originalAccs.get(a) + tab;
		results += crossReferenceAccs.get(a).get(b).get(c) + tab;
                  results += accessionVersions.get(a).get(b).get(c) + tab;
                  results += databaseNames.get(a).get(b).get(c) + tab;
                  results += taxonIds.get(a).get(b).get(c) + tab;
                  results += newline;	
	     }
         }
    }
 }

Script

List split = new ArrayList();
if (!string.equals("")) {
	String regexString = ",";
	if (regex != void) {
		regexString = regex;
	}
	String[] result = string.split(regexString);
	for (int i = 0; i < result.length; i++) {
		split.add(result[i].replaceAll(" ", ""));
	}
}

Value