StRAnGER Web Service Workflow

Created: 2011-02-15 17:28:17 Last updated: 2011-02-15 17:30:37

Download Workflow

StRAnGER is a web-based application, which performs functional analysis of high-throughput genomic datasets, starting from a list of significant genes derived from statistical and empirical thresholds, by utilizing the GO database and the KEGG pathway database as well as established statistical methods in order to relate the identified significant genes with important nodes in the GO tree structure or map those genes to over-represented metabolic pathways.

Preview

Download as scalable diagram (SVG)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/1857/download?version=1
[ More Info Expand ]

Workflow Components

Authors (0)

Titles (0)

Descriptions (0)

Dependencies (0)

Inputs (4)

Name	Description
TermFile
GeneFile
AnnotFile
options

Processors (15)

Name	Type	Description
execute_Stranger	wsdl	Wsdl http://grissomdevweb.ekt.gr:8080/axis2/services/stranger_webservice?wsdl Wsdl Operation execute_Stranger
execute_Stranger_input	xmlsplitter
uploadTermFile	wsdl	Wsdl http://grissomdevweb.ekt.gr:8080/axis2/services/stranger_webservice?wsdl Wsdl Operation uploadTermFile
uploadTermFile_input	xmlsplitter
uploadTermFile_output	xmlsplitter
execute_Stranger_output	xmlsplitter
Encode_Byte_Array_to_Base_64	localworker	Script import org.apache.commons.codec.binary.Base64; base64 = new String(Base64.encodeBase64(bytes));
Encode_Byte_Array_to_Base_64_2	localworker	Script import org.apache.commons.codec.binary.Base64; base64 = new String(Base64.encodeBase64(bytes));
Encode_Byte_Array_to_Base_64_3	localworker	Script import org.apache.commons.codec.binary.Base64; base64 = new String(Base64.encodeBase64(bytes));
uploadGeneFile	wsdl	Wsdl http://grissomdevweb.ekt.gr:8080/axis2/services/stranger_webservice?wsdl Wsdl Operation uploadGeneFile
uploadGeneFile_input	xmlsplitter
uploadGeneFile_output	xmlsplitter
uploadAnnotFile	wsdl	Wsdl http://grissomdevweb.ekt.gr:8080/axis2/services/stranger_webservice?wsdl Wsdl Operation uploadAnnotFile
uploadAnnotFile_input	xmlsplitter
uploadAnnotFile_output	xmlsplitter

Beanshells (0)

Outputs (1)

Name	Description
stranger_out

Datalinks (19)

Source	Sink
execute_Stranger_input:output	execute_Stranger:parameters
uploadTermFile_output:return	execute_Stranger_input:TermFileID
uploadGeneFile_output:return	execute_Stranger_input:GeneFileID
uploadAnnotFile_output:return	execute_Stranger_input:AnnotFileID
options	execute_Stranger_input:options
uploadTermFile_input:output	uploadTermFile:parameters
Encode_Byte_Array_to_Base_64:base64	uploadTermFile_input:termfile
uploadTermFile:parameters	uploadTermFile_output:input
execute_Stranger:parameters	execute_Stranger_output:input
TermFile	Encode_Byte_Array_to_Base_64:bytes
AnnotFile	Encode_Byte_Array_to_Base_64_2:bytes
GeneFile	Encode_Byte_Array_to_Base_64_3:bytes
uploadGeneFile_input:output	uploadGeneFile:parameters
Encode_Byte_Array_to_Base_64_3:base64	uploadGeneFile_input:genefile
uploadGeneFile:parameters	uploadGeneFile_output:input
uploadAnnotFile_input:output	uploadAnnotFile:parameters
Encode_Byte_Array_to_Base_64_2:base64	uploadAnnotFile_input:annotfile
uploadAnnotFile:parameters	uploadAnnotFile_output:input
execute_Stranger_output:return	stranger_out

Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Elico stranger

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)

(People/Groups)

Elico stranger

Information Attributions (0)

(Workflows/Files)

None

Information Tags (0)

None

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

541 viewings

680 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

StRAnGER Web Service Workflow

Created by Elico stranger on Tuesday 15 February 2011 17:28:17 (UTC)

Last edited by Elico stranger on Tuesday 15 February 2011 17:30:37 (UTC)