retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services

Created: 2010-07-21 13:56:08 Last updated: 2010-07-21 13:58:41

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informations on Web services available at http://xml.nig.ac.jp/index.html

example :

accession : AB000100
database : DDBJ
program : blastn

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Workflow Components

Inputs (3)

Name	Description
sequence_database
bioinformatics_program
DDBJ_accession

Processors (3)

Name	Type	Description
getFASTA_DDBJEntry	arbitrarywsdl	Get DDBJ entry of FASTA Format by Accession Number
searchSimple	arbitrarywsdl	Execute Blast
extractPosition	arbitrarywsdl	get position information from BLAST

Beanshells (0)

Outputs (1)

Name	Description
position_blast_report_ddbj

Links (6)

Source	Sink
getFASTA_DDBJEntry:Result	searchSimple:query
sequence_database	searchSimple:database
bioinformatics_program	searchSimple:program
DDBJ_accession	getFASTA_DDBJEntry:accession
searchSimple:Result	extractPosition:result
extractPosition:Result	position_blast_report_ddbj

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Information Workflow Type

Taverna 1

Information Uploader

Lebreton

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Information Version 1 (of 1)

Information Credits (1)

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Lebreton

Information Attributions (1)

(Workflows/Files)

BLAST using DDBJ service

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retrieve nucleotide sequence and do a BLAST from DDBJ Web services

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Information Statistics

2069 viewings

1742 downloads

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retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services

Created by Lebreton on Wednesday 21 July 2010 13:56:08 (UTC)

Last edited by Lebreton on Wednesday 21 July 2010 13:58:41 (UTC)

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retrieve nucleotide sequence and do a BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example : accession : AB000100 database : DDBJ program : blastn

Created: 2010-09-01 | Last updated: 2010-09-01

Credits: Lebreton

Attributions: retrieve nucleotide sequence and do a BLAST and extract position from DDBJ Web services