EntrezGeneId_to_GOFunction
Created: 2010-05-13 12:07:48
Last updated: 2010-05-13 12:09:51
The workflow takes a list of Entrez gene ids and returns the corresponding GO function definitions.
Example value:
1306
486
4712
108
9912
7639
23786
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Workflow Components
Authors (1)
Titles (1)
EntrezGeneId_to_GOFunction |
Descriptions (1)
The workflow takes a list of Entrez gene ids and returns the corresponding GO function definitions |
Dependencies (0)
Inputs (1)
Name |
Description |
GeneList |
list of Entrez gene ids
list of Entrez gene ids. One gene id per line.
|
Processors (6)
Name |
Type |
Description |
Workflow1 |
workflow |
|
Split_Genelist |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = ",";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
string_value |
stringconstant |
Value\n |
Split_Function |
localworker |
ScriptList split = new ArrayList();
if (!string.equals("")) {
String regexString = ",";
if (regex != void) {
regexString = regex;
}
String[] result = string.split(regexString);
for (int i = 0; i < result.length; i++) {
split.add(result[i]);
}
}
|
regex_value |
stringconstant |
Value\n\n |
concatenate_geneID_GOFunction |
beanshell |
ScriptString geneID = GeneID.trim();
String[] GO_function = GOdescription.split("\n");
String output = "";
for(int i = 0; i< GO_function.length; i++)
{
output = output + geneID + "\t" + GO_function[i] + "\n";
}
|
Beanshells (1)
Name |
Description |
Inputs |
Outputs |
concatenate_geneID_GOFunction |
|
GeneID
GOdescription
|
output
|
Outputs (1)
Name |
Description |
GOFunction |
GO function definition for given Entrez ids
GO function definitions for given Entrez ids.
The format of the output is: <geneID GOdefinition>
|
Datalinks (8)
Source |
Sink |
Split_Genelist:split |
Workflow1:geneID |
string_value:value |
Split_Genelist:regex |
GeneList |
Split_Genelist:string |
Workflow1:GO_function |
Split_Function:string |
regex_value:value |
Split_Function:regex |
Split_Genelist:split |
concatenate_geneID_GOFunction:GeneID |
Split_Function:split |
concatenate_geneID_GOFunction:GOdescription |
concatenate_geneID_GOFunction:output |
GOFunction |
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License
All versions of this Workflow are
licensed under:
Version 1
(of 1)
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