This workflow uses one or more services that are deprecated as of 31st December 2012 (almost 12 years ago), and may no longer function. Show details...

Entrez Gene to KEGG Pathway

Created: 2010-04-15 12:22:12 Last updated: 2010-04-15 12:22:13

This workflow reads in a file from the GenePattern web site and extracts a list of Entrez gene ids. It then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.

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Information Workflow Type

Taverna 2

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Paul Fisher

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Entrez Gene to KEGG Pathway

Created by Paul Fisher on Wednesday 14 April 2010 12:40:44 (UTC)

Last edited by Paul Fisher on Wednesday 14 April 2010 12:42:32 (UTC)
Entrez Gene to KEGG Pathway

Created by Paul Fisher on Thursday 15 April 2010 12:22:12 (UTC)

Revision comment:

Updated the process of getting the pathways for each Entrz gene, and combined them using a single service to produce output

Pathway Name Gene Name1 Gene Name2

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