Lucene_bioquery_optimizer_MR1

This workflow does four things:

1. it retrieves documents relevant for the query string
2. it discovers entities in those documents, these are considered relevant entities
3. it filters proteins from those entities (on the tag protein_molecule)
4. it removes all terms from the list produced by 3 (query terms temporarily considered proteins)

ToDo

• Replace step 4 by the following procedure:

1. remove the query terms from the output of NER (probably by a regexp matching on what is inside the tag, possibly case-insensitive) 2. remove tag_as_protein_molecule (obsolete)

• Add synonym service/workflow

Note that Remove_inputquery has an alternative iteration strategy (dot product instead of cross product). Idem for 'Join' in 'SplitQuery'.