Tag Results

Items tagged with "rna-seq" (5)

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Workflows (5)

BioExtract Server

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zohim

RNA-Seq workflow with TopHat and Cufflinks... (1)

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An example workflow demonstrating the RNA-seq analysis using Bioextract Server. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. (Ref: http://www.nature.com/nprot/journal/v7/n3/full/nprot.2012.016.html).

Created: 2013-11-09 | Last updated: 2014-04-10

Credits: zohim Carol Lushbough Bioextract BioExtract Server for Genomics

Galaxy

Uploader

Björn Grüning

Clustered heatmap of signals around the TSSs (1)

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Galaxy workflow based on deepTools which creates a clustered heatmap of signals around the TSS. One bigwig file is needed as input with the signal and an annotation file with your TSS regions. The output will be a heatmap. You can create such a bigwig file with the bamCorrelate toolFor more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03 | Last updated: 2014-04-03

Credits: Björn Grüning

Galaxy

Uploader

Björn Grüning

Heatmap of read coverages (1)

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Galaxy workflow based on deepTools which creates a clustered heatmap of the read coverage. Two BAM files will be used as input and a heatmap will be the output.For more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03

Credits: Björn Grüning

Galaxy

Uploader

Björn Grüning

Heatmap of read coverages (single BAM file) (1)

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Galaxy workflow based on deepTools which creates a clustered heatmap of the read coverage. One BAM file will be used as input and a heatmap will be the output.For more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03

Credits: Björn Grüning

Galaxy

Uploader

Björn Grüning

Compute and correct GC bias in NGS data (1)

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Galaxy workflow based on deepTools which will compute and correct GC bias in your NGS data. For more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03

Credits: Björn Grüning

What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/tags/4009

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