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Items tagged with "psicquic" (10)

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Rafael C. Jimenez

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PSICQUIC

Unique name: psicquic
Created: Wednesday 20 July 2011 14:16:10 (UTC)

Open group of people interested in molecular interactions using PSICQUIC services

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Workflows (9)

Taverna 2

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Rafael C. Jimenez

Molecular Interactions from IntAct PSICQUI... (2)

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Get molecular interaction data in psi-mitab25 from IntAct through its PSICQUIC service. As input you can use an Uniprot Acc like "P99999" or a MIQL query like "alias:(KHDRBS1 OR HCK)". This workflow finds by itself how many queries needs to make (SOAP service limited to 200 binary interactions per call) to be able to return all the results in one file.

Created: 2011-05-17 | Last updated: 2011-07-20

Credits: Rafael C. Jimenez

Taverna 2

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Rafael C. Jimenez

Molecular Interactions from IntAct PSICQUI... (2)

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Get molecular interaction data in psi-mitab25 from IntAct through its REST PSICQUIC service. As input you can use an Uniprot Acc like "P99999" or a MIQL query like "alias:KHDRBS1".

Created: 2011-05-29 | Last updated: 2011-10-05

Credits: Rafael C. Jimenez

Taverna 2

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Skerrien

Retrieval of molecular interactions within... (1)

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Description of the flow steps: 1. split the list of identifiers using allows separators, 2. build a MIQL query with these identifier in preparation of running a PSICQUIC request, 3. Retrieve molecular interaction from IntAct's PSICQUIC service using the generated MIQL statement, 4. filter the list of returned MITAB using the list of identifiers and only keep those lines where both participating molecules are members of the input list, 5. return the count and list of filtered MITAB lines.

Created: 2011-06-10 | Last updated: 2011-06-10

Credits: Skerrien

Taverna 2

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Rafael C. Jimenez

PSICQUIC Registry (Molecular Interactions ... (1)

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Query the PSICQUIC registry to retrieve information about services providing molecular interactions

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: Rafael C. Jimenez

Taverna 2

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Rafael C. Jimenez

List of PSICQUIC services (names and URLs)... (1)

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PSICQUIC provides access to molecular interaction databases. This workflow queries the registry and gets a list of available PSICQUIC services (names and URLs).

Created: 2011-07-20 | Last updated: 2011-07-20

Credits: Rafael C. Jimenez

Taverna 2

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Rafael C. Jimenez

Get Molecular Interactions from a PSICQUIC... (3)

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Check the different iput parameter you could use for this workflow in ... http://code.google.com/p/psicquic/wiki/RestAccess Check available PSICQUIC Services in ... http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS More about PSICQUIC ... http://code.google.com/p/psicquic/