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Introduction to WebServices, Workflows and Taverna

Created: 2015-01-22 12:00:28 | Last updated: 2015-01-22 12:29:03

Credits: Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint 2007 presentation

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Short introduction to Taverna 2.5

Created: 2015-01-22 12:37:00

Credits: Aleksandra Pawlik Stian Soiland-Reyes Katy Wolstencroft Alan Williams Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint 2007 presentation

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Building simple workflow in Taverna

Created: 2015-01-22 12:38:13

Credits: Aleksandra Pawlik Stian Soiland-Reyes Katy Wolstencroft Alan Williams Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 61 times | Downloaded: 32 times

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Using REST services from Biocatalogue

Created: 2015-01-22 12:40:34 | Last updated: 2015-01-22 12:42:14

Credits: Aleksandra Pawlik Stian Soiland-Reyes Katy Wolstencroft Alan Williams Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 59 times | Downloaded: 31 times

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Importing data from spreadsheets into Taverna workflows

Created: 2015-01-22 13:00:28

Credits: Aleksandra Pawlik Katy Wolstencroft Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 56 times | Downloaded: 31 times

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Exploring Taverna Engine - managing lists, looping, ...

Created: 2015-01-22 16:01:32

Credits: Aleksandra Pawlik Stian Soiland-Reyes Katy Wolstencroft Alan Williams Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 119 times | Downloaded: 31 times

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Taverna 2.1 beta 2 Workbench examples

Unique name: taverna-2-1-beta-2-workbench-examples
Created: Thursday 18 June 2009 15:47:56 (UTC)

0 shared items   |   0 announcements

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VLIZ Workshop Oct 2014

Unique name: VLIZOct2014
Created: Wednesday 01 October 2014 10:42:59 (UTC)

27 shared items   |   0 announcements

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Cranfield Training Course - 22nd January 2015

Unique name: cranfield2015
Created: Wednesday 21 January 2015 15:24:13 (UTC)

6 shared items   |   0 announcements

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Taverna 2.1 beta 1 pack

Created: 2009-05-29 13:16:30 | Last updated: 2012-03-05 11:34:00

2 items in this pack

Comments: 2 | Viewed: 87 times | Downloaded: 74 times

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Taverna 2.1 beta 2 example workflows

Created: 2009-06-26 13:59:43 | Last updated: 2009-12-17 17:08:41

9 items in this pack

Comments: 0 | Viewed: 269 times | Downloaded: 59 times

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Taverna 2.1 beta 2

Created: 2009-07-02 12:51:11 | Last updated: 2009-09-21 14:48:06

6 items in this pack

Comments: 0 | Viewed: 171 times | Downloaded: 62 times

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Taverna 2.2 starter pack

Created: 2010-06-11 13:40:05 | Last updated: 2012-01-03 15:46:09

20 items in this pack

Comments: 0 | Viewed: 874 times | Downloaded: 209 times

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Natural product likeness filter

Created: 2011-05-13 19:35:39 | Last updated: 2011-08-29 14:25:47

3 items in this pack

Comments: 0 | Viewed: 198 times | Downloaded: 90 times

Square A List Of Numbers (1)

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Simple workflow which squares a list of numbers.

Created: 2010-03-19 | Last updated: 2010-03-19

Credits: Paul Miller

R logical workflow (1)

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Checks what the logical_input is in R. For an logical_input of TRUE - is_false should be FALSE and is_true TRUE FALSE - is_false should be TRUE and is_true FALSE For any other input values, is_false and is_true should both be NA

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: Alan Williams

R string workflow (1)

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This workflow determines the lower case version of the input string.

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: Alan Williams

R logical vector workflow (1)

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The workflow returns a list containing the logical inversion of the logical vector input

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: Alan Williams

R integer vector example (1)

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This workflow takes a list of integer values and returns a list containing the square of the input list's elements, and the sum of the input list's elements.

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: Alan Williams

R string vector example (1)

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The workflow takes a list of strings and outputs a list contains the lower-cased versions of the input elements, and also a concatenation of the input elements

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: Alan Williams

R integer vector example (1)

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This workflow takes a list of integer values and returns a list containing 100 modulus the list's elements, and the sum of the input list's elements.

Created: 2010-11-29 | Last updated: 2010-11-29

Credits: Alan Williams

R PNG-value example (2)

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This workflow produces a PNG plot on the figure port.

Created: 2010-11-29 | Last updated: 2010-11-29

Credits: Alan Williams

[untitled] (1)

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This workflow allows the user to search for processes that are involved with a certain gene. Using microarray-files (CEL-files), consisting of wild type and KO mice to which a stimulant is induced, the user can get an idea of the processes involved. (This is done using the global test and the literature weighted global test.) The results are then given as a text-file. Warning: workflow is not working (needs some revisions), all input is currently hardcoded! (You will have to change the file...

Created: 2011-04-26 | Last updated: 2011-04-26

Credits: Dennis Leenheer

Generate Atom Signatures of molecules give... (1)

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Reference: Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries Peter Ertl,* Silvio Roggo, and Ansgar Schuffenhauer Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland http://peter-ertl.com/reprints/Ertl-JCIM-48-68-2008.pdf    The natural product likeness scorer implemented by Peter Ertl was originally devised to screen large compound libraries for natural product likeness in drug designing studies. His work is re...

Created: 2011-05-13 | Last updated: 2011-05-13

Credits: Kalai

Download Structures from PubChem given che... (1)

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This workflow takes the input file containing chemical names and returns a single SDF file of structures. The names are searched against pubchem compounds via e-search. If the compound name is found an XML file containing PubChem ID is returned.The max return compound_ID is set to 1 which could be increased. If the compound name is not found then no ID is returned.  The pubchem compound_ID is then used to download structures from PubChem.  

Created: 2011-05-24 | Last updated: 2011-05-24

Credits: Kalai Michael Gerlich

Attributions: Download Entries from PubChem

ASTM D0427-04 - Preliminary Workflow (1)

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ASTM D0427-04: Standard Test Method for Shrinkage Factors of Soils by the Mercury MethodThis a preliminary version of a ASTM D0427 Workflow. This seems like a complex workflow but it does not. A lot of services is because I'm using a basic calculator web service to do simple a math calculations (http://www.dneonline.com/calculator.asmx) This simple web service calc use only two operands to do calc in four basic operations (add, divide, multiply and substract). So it's needed intermedi...

Created: 2016-04-25

Credits: Juan Felipe Muñoz Fernández