Snapshot of the Pack: Concept profile analysis using Anni Web services (from myExperiment)

Pack Details

Title	Concept profile analysis using Anni Web services
Items	11
Created by	Kristina Hettne
Created at	19:11:26 on Wednesday, 06 February 2013
Last updated at	08:17:33 on Tuesday, 15 July 2014

Description

Concept profile analysis is a knowledge discovery method that proved successful in generating hypotheses about molecular mechanisms explaining the results from genotype-phenotype studies. This technology has been implemented in the Anni standalone application ( http://biosemantics.org/anni ). This pack contains a number of workflows that can be used together to configure and run typical user pipelines from Anni through the Anni Web services ( http://www.biocatalogue.org/services/3559 ).

Downloaded Items (11)

Workflow: Annotate gene list with top ranking concepts [ open local copy ]
Type: Taverna 2
Originally uploaded by: Eleni
Version: 4 (created on: 03/12/2013, last edited on: 03/04/2015)
Version uploaded by: Eleni

Added to pack by: Kristina Hettne (15/07/2014 @ 08:15:27)
Comment:

A fast workflow for gene annotation.
Workflow: Get concept suggestions from term [ open local copy ]
Type: Taverna 2
Originally uploaded by: Eleni
Version: 1 (created on: 31/08/2013, last edited on: 31/08/2013)
Version uploaded by: Eleni

Added to pack by: Kristina Hettne (03/09/2013 @ 07:19:10)
Comment: none
Workflow: GWAS to biomedical concept [ open local copy ]
Type: Taverna 2
Originally uploaded by: Kristina Hettne
Version: 3 (created on: 15/04/2013, last edited on: 14/07/2014)
Version uploaded by: Kristina Hettne

Added to pack by: Kristina Hettne (15/04/2013 @ 18:14:33)
Comment:

A nested workflow illustrating the use of many of the concept profile analysis Web service building blocks.
Workflow: Explain concept scores [ open local copy ]
Type: Taverna 2
Originally uploaded by: Reinout van Schouwen
Version: 7 (created on: 18/07/2012, last edited on: 14/07/2014)
Version uploaded by: Kristina Hettne

Added to pack by: Kristina Hettne (06/02/2013 @ 19:16:30)
Comment: none
Workflow: DatabaseID to ConceptID [ open local copy ]
Type: Taverna 2
Originally uploaded by: Marco Roos
Version: 7 (created on: 18/07/2012, last edited on: 14/07/2014)
Version uploaded by: Kristina Hettne

Added to pack by: Kristina Hettne (06/02/2013 @ 19:16:06)
Comment: none
Workflow: Match concept profiles [ open local copy ]
Type: Taverna 2
Originally uploaded by: Marco Roos
Version: 6 (created on: 18/07/2012, last edited on: 14/07/2014)
Version uploaded by: Kristina Hettne

Added to pack by: Kristina Hettne (06/02/2013 @ 19:15:48)
Comment: none
Workflow: Get concept information [ open local copy ]
Type: Taverna 2
Originally uploaded by: Kristina Hettne
Version: 5 (created on: 18/07/2012, last edited on: 14/07/2014)
Version uploaded by: Kristina Hettne

Added to pack by: Kristina Hettne (06/02/2013 @ 19:12:36)
Comment: none
Workflow: List Concept Sets [ open local copy ]
Type: Taverna 2
Originally uploaded by: Kristina Hettne
Version: 3 (created on: 18/07/2012, last edited on: 14/07/2014)
Version uploaded by: Kristina Hettne

Added to pack by: Kristina Hettne (06/02/2013 @ 19:12:24)
Comment: none
Workflow: Find co-occurring documents [ open local copy ]
Type: Taverna 2
Originally uploaded by: Kristina Hettne
Version: 6 (created on: 18/07/2012, last edited on: 14/07/2014)
Version uploaded by: Kristina Hettne

Added to pack by: Kristina Hettne (06/02/2013 @ 19:12:16)
Comment: none
Workflow: Filter concepts with profiles [ open local copy ]
Type: Taverna 2
Originally uploaded by: Kristina Hettne
Version: 4 (created on: 14/09/2012, last edited on: 14/07/2014)
Version uploaded by: Kristina Hettne

Added to pack by: Kristina Hettne (06/02/2013 @ 19:12:04)
Comment: none
Workflow: Match concept profiles with predefined set [ open local copy ]
Type: Taverna 2
Originally uploaded by: Kristina Hettne
Version: 2 (created on: 05/02/2013, last edited on: 14/07/2014)
Version uploaded by: Kristina Hettne

Added to pack by: Kristina Hettne (06/02/2013 @ 19:11:45)
Comment: none

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Packs within this pack:	0
External items:	0
Items that can be viewed, but not downloaded:	0; ( 0 workflows, 0 files )
Items that cannot be viewed:	0

Workflows:	11
Files:	0

Snapshot of the Pack: Concept profile analysis using Anni Web services

Pack Details

Description

Summary of Pack Items (11)

Downloaded Items (11)

Not Downloaded Items (0)

Packs within this pack (0)

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