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Blob kidney factomics nominalised triples in RDF

Created: 2011-07-14 22:04:54

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 The extracted triples (after nominalising the predicate) in RDFXML

File type: RDF data

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Blob kidney factomics triples in RDF

Created: 2011-07-14 21:58:57

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 The KUP triples in RDF XML

File type: RDF data

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1505?size=60x60 Gb James Eales
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Blob list of biologically-themed journals

Created: 2011-06-30 00:56:28 | Last updated: 2011-06-30 00:56:50

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is a text file listing biological journals

File type: Plain text

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1505?size=60x60 Gb James Eales
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Pack Creating a focused corpus of factual outcomes from b...


Created: 2011-06-28 11:19:04 | Last updated: 2011-12-13 16:02:16

 This pack contains resources and supplementary files for the submission to the MIND2011 workshop titled "Creating a focused corpus of factual outcomes from biomedical experiments" by James Eales, George Demetriou and Robert Stevens

1 item in this pack

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1505?size=60x60 Gb James Eales
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Blob Description of RapidMiner plugin video part 2

Created: 2011-06-06 11:56:45 | Last updated: 2011-06-06 11:57:42

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Simple text file listing the steps in part 2 of the video

File type: Plain text

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1505?size=60x60 Gb James Eales
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Blob Description of RapidMiner plugin video part 1

Created: 2011-06-06 11:55:39 | Last updated: 2011-06-06 11:56:18

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Simple text file listing the steps in part 1 of the video

File type: Plain text

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1505?size=60x60 Gb James Eales
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Pack RapidMiner plugin for Taverna videos and descriptions


Created: 2011-06-06 10:17:52 | Last updated: 2011-12-13 16:02:04

 This pack contains videos the show how to use various parts of the RapidMiner plugin for Taverna. The videos demonstrate how to build a Taverna workflow which collects a GEO dataset, uploads it to RapidAnalytics, trains a classifier on one half of the data and tests it on the other half. This classification process can be used to gauge how well mutant and control assays agree across experimental repeats.

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1505?size=60x60 Gb James Eales
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Blob attribute descriptions for article title training data

Created: 2011-05-20 23:04:48

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This PDF contains details of each attribute used in the article title classification.

File type: Adobe PDF

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1505?size=60x60 Gb James Eales
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Blob KUP titles cytoscape triple graph

Created: 2011-05-20 22:49:34 | Last updated: 2011-05-20 22:50:45

Credits: User James Eales

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is a cytoscape .cys file that contains the graph discussed in the paper. "An exercise in kidney factomics: From article titles to RDF knowledge base".

File type: Trident (Package)

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Taverna 2
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1505?size=60x60 Gb James Eales

Workflow One sentence per line (1)

Thumb
This workflow accepts a plain text input and provides a single text document per input containing one sentence per line.  Newline characters are removed from the original input. The OpenNLP sentence splitter is used to split the text, this is provided by University of Manchester Web Services.

Created: 2011-05-06 | Last updated: 2011-12-13

Credits: User James Eales

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Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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